Hb_005432_020

Information

Type -
Description -
Location Contig5432: 36711-46148
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47882: 30566-58221 , PASA_asmbl_47885: 36235-36718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005432_020 0.0 - - -
2 Hb_101034_010 0.0060274246 - - -
3 Hb_181013_010 0.0063983193 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
4 Hb_000142_090 0.0115621883 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
5 Hb_006120_160 0.0130911176 - - -
6 Hb_134377_070 0.0205595191 - - -
7 Hb_159124_010 0.0244855007 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
8 Hb_056506_080 0.0505775579 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
9 Hb_179183_010 0.0725896562 - - RALF-LIKE 32 family protein [Populus trichocarpa]
10 Hb_047923_030 0.0786198275 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
11 Hb_000975_060 0.0804552785 - - -
12 Hb_002576_010 0.0823414038 - - -
13 Hb_008755_020 0.0899543303 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_099878_040 0.0957086151 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
15 Hb_000248_020 0.0969048849 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
16 Hb_094694_010 0.0997803878 - - -
17 Hb_039547_010 0.1113991775 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
18 Hb_000916_010 0.1119303777 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
19 Hb_001174_050 0.1279126834 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000209_010 0.1367342407 - - -

Gene co-expression network

sample Hb_005432_020 Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_005432_020--Hb_101034_010 Hb_181013_010 Hb_181013_010 Hb_005432_020--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_005432_020--Hb_000142_090 Hb_006120_160 Hb_006120_160 Hb_005432_020--Hb_006120_160 Hb_134377_070 Hb_134377_070 Hb_005432_020--Hb_134377_070 Hb_159124_010 Hb_159124_010 Hb_005432_020--Hb_159124_010 Hb_101034_010--Hb_006120_160 Hb_101034_010--Hb_181013_010 Hb_101034_010--Hb_000142_090 Hb_101034_010--Hb_159124_010 Hb_101034_010--Hb_134377_070 Hb_181013_010--Hb_000142_090 Hb_181013_010--Hb_134377_070 Hb_181013_010--Hb_006120_160 Hb_181013_010--Hb_159124_010 Hb_000142_090--Hb_134377_070 Hb_000142_090--Hb_006120_160 Hb_000142_090--Hb_159124_010 Hb_006120_160--Hb_159124_010 Hb_006120_160--Hb_134377_070 Hb_134377_070--Hb_159124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0377329 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0333167 0.156691

CAGE analysis