Hb_005433_010

Information

Type -
Description -
Location Contig5433: 2925-6214
Sequence    

Annotation

kegg
ID rcu:RCOM_1289050
description WD-repeat protein, putative
nr
ID XP_012085980.1
description PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
swissprot
ID P90587
description 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1
trembl
ID A0A067K1W7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22471 PE=4 SV=1
Gene Ontology
ID GO:0009987
description 66 kda stress

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47886: 2871-3202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005433_010 0.0 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
2 Hb_006132_070 0.1247919354 - - phosphate transporter [Manihot esculenta]
3 Hb_000243_200 0.1330107182 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003861_070 0.136159506 - - PREDICTED: uncharacterized protein LOC105650781 [Jatropha curcas]
5 Hb_004951_070 0.1400160285 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
6 Hb_000175_590 0.1440529915 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
7 Hb_000300_670 0.1453027779 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
8 Hb_000061_020 0.1475617939 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
9 Hb_000390_310 0.1501108229 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
10 Hb_002769_020 0.1559260165 - - DNA-damage-inducible protein f, putative [Ricinus communis]
11 Hb_178968_140 0.1571261172 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000031_090 0.1577401478 - - PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Jatropha curcas]
13 Hb_158092_030 0.1618210088 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
14 Hb_000700_150 0.162285438 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000920_030 0.1624873264 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_001328_030 0.1629205555 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
17 Hb_000576_050 0.16353354 - - Kinase superfamily protein [Theobroma cacao]
18 Hb_162286_010 0.1654871585 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
19 Hb_065755_030 0.1663798834 - - -
20 Hb_025557_050 0.1667731804 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]

Gene co-expression network

sample Hb_005433_010 Hb_005433_010 Hb_006132_070 Hb_006132_070 Hb_005433_010--Hb_006132_070 Hb_000243_200 Hb_000243_200 Hb_005433_010--Hb_000243_200 Hb_003861_070 Hb_003861_070 Hb_005433_010--Hb_003861_070 Hb_004951_070 Hb_004951_070 Hb_005433_010--Hb_004951_070 Hb_000175_590 Hb_000175_590 Hb_005433_010--Hb_000175_590 Hb_000300_670 Hb_000300_670 Hb_005433_010--Hb_000300_670 Hb_001085_050 Hb_001085_050 Hb_006132_070--Hb_001085_050 Hb_001401_080 Hb_001401_080 Hb_006132_070--Hb_001401_080 Hb_029695_110 Hb_029695_110 Hb_006132_070--Hb_029695_110 Hb_006132_070--Hb_000243_200 Hb_000072_070 Hb_000072_070 Hb_006132_070--Hb_000072_070 Hb_032202_230 Hb_032202_230 Hb_000243_200--Hb_032202_230 Hb_000243_200--Hb_004951_070 Hb_000576_050 Hb_000576_050 Hb_000243_200--Hb_000576_050 Hb_007313_090 Hb_007313_090 Hb_000243_200--Hb_007313_090 Hb_001427_050 Hb_001427_050 Hb_000243_200--Hb_001427_050 Hb_000390_310 Hb_000390_310 Hb_000243_200--Hb_000390_310 Hb_001328_030 Hb_001328_030 Hb_003861_070--Hb_001328_030 Hb_065755_030 Hb_065755_030 Hb_003861_070--Hb_065755_030 Hb_178968_140 Hb_178968_140 Hb_003861_070--Hb_178968_140 Hb_003861_070--Hb_000390_310 Hb_000287_050 Hb_000287_050 Hb_003861_070--Hb_000287_050 Hb_029142_030 Hb_029142_030 Hb_003861_070--Hb_029142_030 Hb_002093_030 Hb_002093_030 Hb_004951_070--Hb_002093_030 Hb_004951_070--Hb_000175_590 Hb_004951_070--Hb_032202_230 Hb_004951_070--Hb_000390_310 Hb_007044_040 Hb_007044_040 Hb_004951_070--Hb_007044_040 Hb_000175_590--Hb_000390_310 Hb_065525_130 Hb_065525_130 Hb_000175_590--Hb_065525_130 Hb_001652_080 Hb_001652_080 Hb_000175_590--Hb_001652_080 Hb_000175_590--Hb_032202_230 Hb_005276_130 Hb_005276_130 Hb_000175_590--Hb_005276_130 Hb_025557_050 Hb_025557_050 Hb_000300_670--Hb_025557_050 Hb_000640_160 Hb_000640_160 Hb_000300_670--Hb_000640_160 Hb_003029_070 Hb_003029_070 Hb_000300_670--Hb_003029_070 Hb_004970_190 Hb_004970_190 Hb_000300_670--Hb_004970_190 Hb_006816_180 Hb_006816_180 Hb_000300_670--Hb_006816_180 Hb_007803_030 Hb_007803_030 Hb_000300_670--Hb_007803_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92013 0.387618 1.38268 0.62634 1.20025 0.555995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.729898 0.717731 0.160913 0.332998 1.2536

CAGE analysis