Hb_005433_020

Information

Type -
Description -
Location Contig5433: 9170-12592
Sequence    

Annotation

kegg
ID rcu:RCOM_1289060
description spore coat protein, putative (EC:1.3.3.5)
nr
ID XP_012072194.1
description PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
swissprot
ID F4I4K5
description Multicopper oxidase LPR1 OS=Arabidopsis thaliana GN=LPR1 PE=2 SV=1
trembl
ID A0A067KPG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04680 PE=4 SV=1
Gene Ontology
ID GO:0005507
description multicopper oxidase lpr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47888: 9399-12772 , PASA_asmbl_47889: 9762-9966
cDNA
(Sanger)
(ID:Location)		 047_E21.ab1: 9399-11644

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005433_020 0.0 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
2 Hb_003373_050 0.0714033098 - - receptor protein kinase zmpk1, putative [Ricinus communis]
3 Hb_004306_090 0.0816282274 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
4 Hb_000460_040 0.0821198714 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
5 Hb_000088_230 0.0923556724 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
6 Hb_002010_030 0.0929141127 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
7 Hb_002871_180 0.0943718073 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
8 Hb_005329_010 0.0951695903 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
9 Hb_003767_060 0.0962086533 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
10 Hb_000116_090 0.0967557398 - - catalase [Hevea brasiliensis]
11 Hb_001338_120 0.0979632164 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
12 Hb_001369_340 0.0981125182 - - Peroxisomal membrane protein 11B [Theobroma cacao]
13 Hb_000307_150 0.1019623472 - - PREDICTED: thioredoxin-like protein CDSP32, chloroplastic [Jatropha curcas]
14 Hb_007462_020 0.104826347 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_006106_010 0.1060108826 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
16 Hb_005211_080 0.1063513688 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
17 Hb_007477_060 0.1087032368 - - unknown [Medicago truncatula]
18 Hb_000445_270 0.1093986834 - - ATP binding protein, putative [Ricinus communis]
19 Hb_003494_090 0.1113105689 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
20 Hb_001006_150 0.113517712 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005433_020 Hb_005433_020 Hb_003373_050 Hb_003373_050 Hb_005433_020--Hb_003373_050 Hb_004306_090 Hb_004306_090 Hb_005433_020--Hb_004306_090 Hb_000460_040 Hb_000460_040 Hb_005433_020--Hb_000460_040 Hb_000088_230 Hb_000088_230 Hb_005433_020--Hb_000088_230 Hb_002010_030 Hb_002010_030 Hb_005433_020--Hb_002010_030 Hb_002871_180 Hb_002871_180 Hb_005433_020--Hb_002871_180 Hb_003373_050--Hb_004306_090 Hb_003373_050--Hb_002010_030 Hb_003767_060 Hb_003767_060 Hb_003373_050--Hb_003767_060 Hb_003373_050--Hb_000460_040 Hb_006106_010 Hb_006106_010 Hb_003373_050--Hb_006106_010 Hb_005211_080 Hb_005211_080 Hb_004306_090--Hb_005211_080 Hb_005329_010 Hb_005329_010 Hb_004306_090--Hb_005329_010 Hb_000544_070 Hb_000544_070 Hb_004306_090--Hb_000544_070 Hb_004306_090--Hb_000460_040 Hb_001006_150 Hb_001006_150 Hb_004306_090--Hb_001006_150 Hb_000460_040--Hb_000088_230 Hb_000460_040--Hb_005329_010 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_000460_040--Hb_005211_080 Hb_001322_120 Hb_001322_120 Hb_000088_230--Hb_001322_120 Hb_000088_230--Hb_005329_010 Hb_000088_230--Hb_002871_180 Hb_002529_120 Hb_002529_120 Hb_000088_230--Hb_002529_120 Hb_000088_230--Hb_001006_150 Hb_002010_030--Hb_003767_060 Hb_004017_030 Hb_004017_030 Hb_002010_030--Hb_004017_030 Hb_001369_340 Hb_001369_340 Hb_002010_030--Hb_001369_340 Hb_004109_140 Hb_004109_140 Hb_002010_030--Hb_004109_140 Hb_046739_010 Hb_046739_010 Hb_002010_030--Hb_046739_010 Hb_002871_180--Hb_007477_060 Hb_005649_060 Hb_005649_060 Hb_002871_180--Hb_005649_060 Hb_006570_030 Hb_006570_030 Hb_002871_180--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_002871_180--Hb_001766_160 Hb_002871_180--Hb_001322_120 Hb_000101_330 Hb_000101_330 Hb_002871_180--Hb_000101_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.572848 9.55586 40.1201 10.2815 0.136869 0.398564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.19717 0.0387835 0.0733816 0.293398 54.1277

CAGE analysis