Hb_005433_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig5433: 21053-22528
Sequence    

Annotation

kegg
ID vvi:100233136
description MYBC2-L1; R2R3 Myb transcription factor C2 repressor motif protein
nr
ID CBI26917.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P81393
description Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1
trembl
ID D7T8U6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04760 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription repressor myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47890: 22305-22535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005433_030 0.0 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
2 Hb_092458_010 0.1229056562 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_002615_010 0.1285678361 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
4 Hb_002374_360 0.1332736334 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
5 Hb_002107_110 0.1566439679 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
6 Hb_042098_010 0.1593254272 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
7 Hb_006925_060 0.1595006892 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
8 Hb_000862_060 0.1643176747 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000976_420 0.1693728132 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001635_230 0.1702130016 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_000933_120 0.1730196642 - - hypothetical protein L484_011925 [Morus notabilis]
12 Hb_000507_010 0.1765759445 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
13 Hb_019952_010 0.1783426687 - - -
14 Hb_001246_150 0.1788921503 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
15 Hb_005211_110 0.1813692254 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
16 Hb_048308_010 0.1817190996 - - Peroxidase superfamily protein [Theobroma cacao]
17 Hb_003077_060 0.1832613827 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
18 Hb_011671_200 0.1834956938 - - -
19 Hb_002045_260 0.1880912983 - - calmodulin, putative [Ricinus communis]
20 Hb_001998_190 0.1886543473 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]

Gene co-expression network

sample Hb_005433_030 Hb_005433_030 Hb_092458_010 Hb_092458_010 Hb_005433_030--Hb_092458_010 Hb_002615_010 Hb_002615_010 Hb_005433_030--Hb_002615_010 Hb_002374_360 Hb_002374_360 Hb_005433_030--Hb_002374_360 Hb_002107_110 Hb_002107_110 Hb_005433_030--Hb_002107_110 Hb_042098_010 Hb_042098_010 Hb_005433_030--Hb_042098_010 Hb_006925_060 Hb_006925_060 Hb_005433_030--Hb_006925_060 Hb_003077_060 Hb_003077_060 Hb_092458_010--Hb_003077_060 Hb_092458_010--Hb_002107_110 Hb_092458_010--Hb_002615_010 Hb_018633_010 Hb_018633_010 Hb_092458_010--Hb_018633_010 Hb_002010_020 Hb_002010_020 Hb_092458_010--Hb_002010_020 Hb_001635_230 Hb_001635_230 Hb_002615_010--Hb_001635_230 Hb_002471_190 Hb_002471_190 Hb_002615_010--Hb_002471_190 Hb_002615_010--Hb_002107_110 Hb_158111_010 Hb_158111_010 Hb_002615_010--Hb_158111_010 Hb_002391_020 Hb_002391_020 Hb_002615_010--Hb_002391_020 Hb_002615_010--Hb_002010_020 Hb_000862_060 Hb_000862_060 Hb_002374_360--Hb_000862_060 Hb_003751_050 Hb_003751_050 Hb_002374_360--Hb_003751_050 Hb_002157_100 Hb_002157_100 Hb_002374_360--Hb_002157_100 Hb_002045_260 Hb_002045_260 Hb_002374_360--Hb_002045_260 Hb_008080_030 Hb_008080_030 Hb_002374_360--Hb_008080_030 Hb_002107_110--Hb_003077_060 Hb_000359_260 Hb_000359_260 Hb_002107_110--Hb_000359_260 Hb_000495_050 Hb_000495_050 Hb_002107_110--Hb_000495_050 Hb_002107_110--Hb_001635_230 Hb_001581_040 Hb_001581_040 Hb_042098_010--Hb_001581_040 Hb_042098_010--Hb_002045_260 Hb_042098_010--Hb_008080_030 Hb_005628_050 Hb_005628_050 Hb_042098_010--Hb_005628_050 Hb_000001_010 Hb_000001_010 Hb_042098_010--Hb_000001_010 Hb_002774_180 Hb_002774_180 Hb_042098_010--Hb_002774_180 Hb_006925_060--Hb_000001_010 Hb_063523_010 Hb_063523_010 Hb_006925_060--Hb_063523_010 Hb_003680_250 Hb_003680_250 Hb_006925_060--Hb_003680_250 Hb_006925_060--Hb_005628_050 Hb_006925_060--Hb_003751_050 Hb_187991_010 Hb_187991_010 Hb_006925_060--Hb_187991_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 21.2951 25.7283 1.56266 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.92949 1.72429

CAGE analysis