Hb_005433_040

Information

Type -
Description -
Location Contig5433: 38030-41286
Sequence    

Annotation

kegg
ID rcu:RCOM_0842310
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012072200.1
description PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
swissprot
ID Q8GUG9
description U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2
trembl
ID A0A067L0L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04683 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47891: 38114-41262
cDNA
(Sanger)
(ID:Location)		 012_K05.ab1: 38357-40070 , 016_F12.ab1: 38357-40082 , 024_C19.ab1: 38371-39834

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005433_040 0.0 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
2 Hb_035273_030 0.0819655173 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
3 Hb_001105_070 0.0829389856 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
4 Hb_009773_020 0.0932129136 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
5 Hb_001135_080 0.1016271943 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
6 Hb_065525_020 0.1032895213 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
7 Hb_002030_040 0.1064458573 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
8 Hb_001357_180 0.1074170799 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
9 Hb_000046_100 0.1096327166 - - NADH dehydrogenase, putative [Ricinus communis]
10 Hb_000103_320 0.1099879147 - - Stem-specific protein TSJT1, putative [Ricinus communis]
11 Hb_000840_030 0.1122854145 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
12 Hb_158467_010 0.112996047 - - transporter, putative [Ricinus communis]
13 Hb_015057_060 0.1135322957 - - -
14 Hb_004724_420 0.1159134355 - - fucose synthetase, putative [Ricinus communis]
15 Hb_007904_260 0.1162651177 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
16 Hb_005431_010 0.1164817901 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
17 Hb_021596_090 0.117071012 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
18 Hb_033594_150 0.1174784363 - - unknown [Lotus japonicus]
19 Hb_019516_080 0.1178838381 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001100_060 0.1190725054 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]

Gene co-expression network

sample Hb_005433_040 Hb_005433_040 Hb_035273_030 Hb_035273_030 Hb_005433_040--Hb_035273_030 Hb_001105_070 Hb_001105_070 Hb_005433_040--Hb_001105_070 Hb_009773_020 Hb_009773_020 Hb_005433_040--Hb_009773_020 Hb_001135_080 Hb_001135_080 Hb_005433_040--Hb_001135_080 Hb_065525_020 Hb_065525_020 Hb_005433_040--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_005433_040--Hb_002030_040 Hb_022181_020 Hb_022181_020 Hb_035273_030--Hb_022181_020 Hb_000069_600 Hb_000069_600 Hb_035273_030--Hb_000069_600 Hb_001983_020 Hb_001983_020 Hb_035273_030--Hb_001983_020 Hb_003732_020 Hb_003732_020 Hb_035273_030--Hb_003732_020 Hb_001100_060 Hb_001100_060 Hb_035273_030--Hb_001100_060 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_001105_070--Hb_009773_020 Hb_001105_070--Hb_065525_020 Hb_009773_020--Hb_002030_040 Hb_009773_020--Hb_065525_020 Hb_000103_560 Hb_000103_560 Hb_009773_020--Hb_000103_560 Hb_000840_030 Hb_000840_030 Hb_009773_020--Hb_000840_030 Hb_002301_140 Hb_002301_140 Hb_009773_020--Hb_002301_140 Hb_001135_080--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_001135_080--Hb_000496_060 Hb_007926_060 Hb_007926_060 Hb_001135_080--Hb_007926_060 Hb_001882_070 Hb_001882_070 Hb_001135_080--Hb_001882_070 Hb_002234_070 Hb_002234_070 Hb_001135_080--Hb_002234_070 Hb_065525_020--Hb_002030_040 Hb_158467_010 Hb_158467_010 Hb_065525_020--Hb_158467_010 Hb_010042_010 Hb_010042_010 Hb_065525_020--Hb_010042_010 Hb_000934_250 Hb_000934_250 Hb_065525_020--Hb_000934_250 Hb_002030_040--Hb_000840_030 Hb_004204_120 Hb_004204_120 Hb_002030_040--Hb_004204_120 Hb_002105_090 Hb_002105_090 Hb_002030_040--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_002030_040--Hb_004324_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7702 5.85366 10.7347 19.7741 13.9974 16.1516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.0944 27.0852 34.8737 10.2149 8.41131

CAGE analysis