Hb_005439_010

Information

Type -
Description -
Location Contig5439: 11488-12968
Sequence    

Annotation

kegg
ID bvg:104890706
description putative ribonuclease H protein At1g65750
nr
ID XP_010674584.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A0A061GW19
description Uncharacterized protein OS=Theobroma cacao GN=TCM_041538 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005439_010 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
2 Hb_043792_020 0.1526130296 - - Retrotransposon gag protein [Medicago truncatula]
3 Hb_001519_210 0.173782057 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
4 Hb_128531_010 0.1817291085 - - phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_159938_010 0.2106002139 - - phosphoprotein phosphatase, putative [Ricinus communis]
6 Hb_095835_010 0.2138271016 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
7 Hb_155556_010 0.223308917 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
8 Hb_050334_010 0.2276570649 - - -
9 Hb_003197_060 0.2342339973 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
10 Hb_154997_010 0.2511123241 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
11 Hb_002869_070 0.2526910764 - - -
12 Hb_012295_020 0.2538530597 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
13 Hb_000920_070 0.2542706408 - - -
14 Hb_012071_010 0.2549791816 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
15 Hb_002473_140 0.2580423546 - - -
16 Hb_142570_010 0.2581187205 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
17 Hb_033908_010 0.2639906692 - - -
18 Hb_032531_010 0.2743428424 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_115656_010 0.2851680298 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_000031_350 0.2856685675 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]

Gene co-expression network

sample Hb_005439_010 Hb_005439_010 Hb_043792_020 Hb_043792_020 Hb_005439_010--Hb_043792_020 Hb_001519_210 Hb_001519_210 Hb_005439_010--Hb_001519_210 Hb_128531_010 Hb_128531_010 Hb_005439_010--Hb_128531_010 Hb_159938_010 Hb_159938_010 Hb_005439_010--Hb_159938_010 Hb_095835_010 Hb_095835_010 Hb_005439_010--Hb_095835_010 Hb_155556_010 Hb_155556_010 Hb_005439_010--Hb_155556_010 Hb_043792_020--Hb_001519_210 Hb_043792_020--Hb_159938_010 Hb_154997_010 Hb_154997_010 Hb_043792_020--Hb_154997_010 Hb_043792_020--Hb_128531_010 Hb_050334_010 Hb_050334_010 Hb_043792_020--Hb_050334_010 Hb_001519_210--Hb_050334_010 Hb_012295_020 Hb_012295_020 Hb_001519_210--Hb_012295_020 Hb_032531_010 Hb_032531_010 Hb_001519_210--Hb_032531_010 Hb_012071_010 Hb_012071_010 Hb_001519_210--Hb_012071_010 Hb_002869_070 Hb_002869_070 Hb_001519_210--Hb_002869_070 Hb_128531_010--Hb_095835_010 Hb_128531_010--Hb_159938_010 Hb_057638_010 Hb_057638_010 Hb_128531_010--Hb_057638_010 Hb_004129_180 Hb_004129_180 Hb_128531_010--Hb_004129_180 Hb_002473_140 Hb_002473_140 Hb_159938_010--Hb_002473_140 Hb_159938_010--Hb_154997_010 Hb_159938_010--Hb_002869_070 Hb_159938_010--Hb_001519_210 Hb_088410_010 Hb_088410_010 Hb_159938_010--Hb_088410_010 Hb_004052_060 Hb_004052_060 Hb_095835_010--Hb_004052_060 Hb_010810_070 Hb_010810_070 Hb_095835_010--Hb_010810_070 Hb_000920_070 Hb_000920_070 Hb_095835_010--Hb_000920_070 Hb_095835_010--Hb_155556_010 Hb_001780_010 Hb_001780_010 Hb_155556_010--Hb_001780_010 Hb_155556_010--Hb_000920_070 Hb_155556_010--Hb_012071_010 Hb_155556_010--Hb_012295_020 Hb_001524_020 Hb_001524_020 Hb_155556_010--Hb_001524_020 Hb_155556_010--Hb_001519_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0480421 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.168807 0.279832 0.656172

CAGE analysis