Hb_005439_040

Information

Type -
Description -
Location Contig5439: 39980-42431
Sequence    

Annotation

kegg
ID pop:POPTR_0019s098401
description hypothetical protein
nr
ID XP_012076887.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067LAU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17198 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005439_040 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_082182_010 0.1580935658 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_001565_110 0.2228246771 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
4 Hb_002486_010 0.2389135708 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
5 Hb_043485_010 0.2623581402 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
6 Hb_000500_140 0.2651117071 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
7 Hb_007747_140 0.2661440396 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
8 Hb_078001_010 0.2662787496 - - Uncharacterized protein TCM_000398 [Theobroma cacao]
9 Hb_010513_010 0.2699878387 - - -
10 Hb_007747_180 0.2740011134 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
11 Hb_013766_010 0.2808840073 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
12 Hb_165071_030 0.280912122 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000367_190 0.2822827729 - - hypothetical protein RCOM_1470550 [Ricinus communis]
14 Hb_024468_020 0.283608952 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_008511_010 0.2841456709 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK6 [Jatropha curcas]
16 Hb_000637_120 0.2926356083 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
17 Hb_130194_010 0.2944672738 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
18 Hb_004020_060 0.2961985378 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003609_020 0.2970246046 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
20 Hb_000025_430 0.299537378 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005439_040 Hb_005439_040 Hb_082182_010 Hb_082182_010 Hb_005439_040--Hb_082182_010 Hb_001565_110 Hb_001565_110 Hb_005439_040--Hb_001565_110 Hb_002486_010 Hb_002486_010 Hb_005439_040--Hb_002486_010 Hb_043485_010 Hb_043485_010 Hb_005439_040--Hb_043485_010 Hb_000500_140 Hb_000500_140 Hb_005439_040--Hb_000500_140 Hb_007747_140 Hb_007747_140 Hb_005439_040--Hb_007747_140 Hb_007747_180 Hb_007747_180 Hb_082182_010--Hb_007747_180 Hb_082182_010--Hb_002486_010 Hb_082182_010--Hb_043485_010 Hb_015690_020 Hb_015690_020 Hb_082182_010--Hb_015690_020 Hb_024468_020 Hb_024468_020 Hb_082182_010--Hb_024468_020 Hb_000260_290 Hb_000260_290 Hb_001565_110--Hb_000260_290 Hb_000025_430 Hb_000025_430 Hb_001565_110--Hb_000025_430 Hb_013766_010 Hb_013766_010 Hb_001565_110--Hb_013766_010 Hb_001565_110--Hb_082182_010 Hb_140049_050 Hb_140049_050 Hb_001565_110--Hb_140049_050 Hb_002805_020 Hb_002805_020 Hb_002486_010--Hb_002805_020 Hb_002486_010--Hb_007747_180 Hb_002486_010--Hb_013766_010 Hb_002486_010--Hb_007747_140 Hb_000011_420 Hb_000011_420 Hb_002486_010--Hb_000011_420 Hb_108329_020 Hb_108329_020 Hb_043485_010--Hb_108329_020 Hb_083820_010 Hb_083820_010 Hb_043485_010--Hb_083820_010 Hb_001486_030 Hb_001486_030 Hb_043485_010--Hb_001486_030 Hb_015690_010 Hb_015690_010 Hb_043485_010--Hb_015690_010 Hb_001246_030 Hb_001246_030 Hb_043485_010--Hb_001246_030 Hb_008147_070 Hb_008147_070 Hb_043485_010--Hb_008147_070 Hb_004048_060 Hb_004048_060 Hb_000500_140--Hb_004048_060 Hb_001619_080 Hb_001619_080 Hb_000500_140--Hb_001619_080 Hb_000003_050 Hb_000003_050 Hb_000500_140--Hb_000003_050 Hb_000723_160 Hb_000723_160 Hb_000500_140--Hb_000723_160 Hb_001008_040 Hb_001008_040 Hb_000500_140--Hb_001008_040 Hb_000436_010 Hb_000436_010 Hb_000500_140--Hb_000436_010 Hb_007747_140--Hb_024468_020 Hb_004328_040 Hb_004328_040 Hb_007747_140--Hb_004328_040 Hb_011056_020 Hb_011056_020 Hb_007747_140--Hb_011056_020 Hb_005224_010 Hb_005224_010 Hb_007747_140--Hb_005224_010 Hb_000297_020 Hb_000297_020 Hb_007747_140--Hb_000297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.079751 0.113037 0 0 0 0.0246949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0787812 0.0774876 0.294794 0.277149 0.0657259

CAGE analysis