Hb_005451_020

Information

Type -
Description -
Location Contig5451: 11853-13687
Sequence    

Annotation

kegg
ID bvg:104886247
description uncharacterized LOC104886247
nr
ID XP_009612366.1
description PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A061F1K1
description Retrotransposon-like protein OS=Theobroma cacao GN=TCM_022803 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005451_020 0.0 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
2 Hb_001160_010 0.2145584145 - - -
3 Hb_010775_050 0.2158451763 - - -
4 Hb_004195_260 0.2582711034 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
5 Hb_001773_010 0.2864153595 - - -
6 Hb_002249_210 0.2983097808 - - -
7 Hb_021068_010 0.3046769905 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
8 Hb_000140_430 0.3056575063 - - -
9 Hb_008758_010 0.3115165841 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_188319_010 0.3155883731 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
11 Hb_002637_020 0.3164096573 - - -
12 Hb_153142_010 0.3183720131 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
13 Hb_114010_020 0.3194358031 - - -
14 Hb_000085_030 0.3203686583 - - -
15 Hb_062741_010 0.3356944634 - - -
16 Hb_001965_020 0.3381908251 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
17 Hb_000028_640 0.3413306802 - - Auxin efflux carrier component, putative [Ricinus communis]
18 Hb_001709_130 0.345555695 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000078_170 0.346073559 - - -
20 Hb_000330_080 0.346090522 - - auxilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_005451_020 Hb_005451_020 Hb_001160_010 Hb_001160_010 Hb_005451_020--Hb_001160_010 Hb_010775_050 Hb_010775_050 Hb_005451_020--Hb_010775_050 Hb_004195_260 Hb_004195_260 Hb_005451_020--Hb_004195_260 Hb_001773_010 Hb_001773_010 Hb_005451_020--Hb_001773_010 Hb_002249_210 Hb_002249_210 Hb_005451_020--Hb_002249_210 Hb_021068_010 Hb_021068_010 Hb_005451_020--Hb_021068_010 Hb_005356_060 Hb_005356_060 Hb_001160_010--Hb_005356_060 Hb_000101_280 Hb_000101_280 Hb_001160_010--Hb_000101_280 Hb_000140_430 Hb_000140_430 Hb_001160_010--Hb_000140_430 Hb_153142_010 Hb_153142_010 Hb_001160_010--Hb_153142_010 Hb_001160_010--Hb_021068_010 Hb_010775_050--Hb_001773_010 Hb_000078_170 Hb_000078_170 Hb_010775_050--Hb_000078_170 Hb_001709_130 Hb_001709_130 Hb_010775_050--Hb_001709_130 Hb_001965_020 Hb_001965_020 Hb_010775_050--Hb_001965_020 Hb_000330_080 Hb_000330_080 Hb_010775_050--Hb_000330_080 Hb_188319_010 Hb_188319_010 Hb_004195_260--Hb_188319_010 Hb_004195_260--Hb_153142_010 Hb_114010_020 Hb_114010_020 Hb_004195_260--Hb_114010_020 Hb_062741_010 Hb_062741_010 Hb_004195_260--Hb_062741_010 Hb_006674_020 Hb_006674_020 Hb_004195_260--Hb_006674_020 Hb_001773_010--Hb_000078_170 Hb_001773_010--Hb_001965_020 Hb_002637_020 Hb_002637_020 Hb_001773_010--Hb_002637_020 Hb_001773_010--Hb_000330_080 Hb_011574_010 Hb_011574_010 Hb_002249_210--Hb_011574_010 Hb_023675_030 Hb_023675_030 Hb_002249_210--Hb_023675_030 Hb_003038_150 Hb_003038_150 Hb_002249_210--Hb_003038_150 Hb_000703_300 Hb_000703_300 Hb_002249_210--Hb_000703_300 Hb_002249_210--Hb_000330_080 Hb_008123_010 Hb_008123_010 Hb_002249_210--Hb_008123_010 Hb_001019_120 Hb_001019_120 Hb_021068_010--Hb_001019_120 Hb_032920_100 Hb_032920_100 Hb_021068_010--Hb_032920_100 Hb_183574_010 Hb_183574_010 Hb_021068_010--Hb_183574_010 Hb_009973_020 Hb_009973_020 Hb_021068_010--Hb_009973_020 Hb_004361_020 Hb_004361_020 Hb_021068_010--Hb_004361_020 Hb_021068_010--Hb_001709_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0144189 0 0 0 0.0348992 0.0203457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0437364

CAGE analysis