Hb_005455_010

Information

Type -
Description -
Location Contig5455: 15888-23518
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04380g
description POPTRDRAFT_708301; hypothetical protein
nr
ID XP_012067110.1
description PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X1 [Jatropha curcas]
swissprot
ID Q84P17
description Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1
trembl
ID B9GLG3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04380g PE=4 SV=2
Gene Ontology
ID GO:0003824
description probable acyl-activating enzyme peroxisomal isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47967: 15883-23745 , PASA_asmbl_47968: 16284-16494
cDNA
(Sanger)
(ID:Location)		 005_J17.ab1: 15883-17846 , 014_G08.ab1: 15883-17837

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005455_010 0.0 - - PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X1 [Jatropha curcas]
2 Hb_002811_240 0.1718278421 - - conserved hypothetical protein [Ricinus communis]
3 Hb_138229_010 0.1812476273 - - hypothetical protein JCGZ_05736 [Jatropha curcas]
4 Hb_000699_050 0.1820293679 - - -
5 Hb_001226_100 0.1834662529 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_007007_130 0.1903263152 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
7 Hb_000152_770 0.1913932361 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
8 Hb_005333_210 0.1930173559 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
9 Hb_009296_060 0.1930253412 - - glutathione s-transferase, putative [Ricinus communis]
10 Hb_001439_040 0.1934212794 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
11 Hb_170878_070 0.1978219908 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
12 Hb_002379_060 0.1988216548 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
13 Hb_033312_080 0.1989640895 - - aldose-1-epimerase, putative [Ricinus communis]
14 Hb_007621_010 0.199803445 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
15 Hb_000215_130 0.2016104296 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
16 Hb_000343_040 0.2022244729 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
17 Hb_000680_070 0.2024831985 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
18 Hb_004709_030 0.2043672391 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
19 Hb_000087_120 0.2058175566 - - AMP dependent CoA ligase, putative [Ricinus communis]
20 Hb_001186_120 0.2062460934 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_005455_010 Hb_005455_010 Hb_002811_240 Hb_002811_240 Hb_005455_010--Hb_002811_240 Hb_138229_010 Hb_138229_010 Hb_005455_010--Hb_138229_010 Hb_000699_050 Hb_000699_050 Hb_005455_010--Hb_000699_050 Hb_001226_100 Hb_001226_100 Hb_005455_010--Hb_001226_100 Hb_007007_130 Hb_007007_130 Hb_005455_010--Hb_007007_130 Hb_000152_770 Hb_000152_770 Hb_005455_010--Hb_000152_770 Hb_000680_070 Hb_000680_070 Hb_002811_240--Hb_000680_070 Hb_001754_120 Hb_001754_120 Hb_002811_240--Hb_001754_120 Hb_001040_150 Hb_001040_150 Hb_002811_240--Hb_001040_150 Hb_178968_080 Hb_178968_080 Hb_002811_240--Hb_178968_080 Hb_000032_600 Hb_000032_600 Hb_002811_240--Hb_000032_600 Hb_000560_060 Hb_000560_060 Hb_138229_010--Hb_000560_060 Hb_004709_030 Hb_004709_030 Hb_138229_010--Hb_004709_030 Hb_138229_010--Hb_001226_100 Hb_002701_170 Hb_002701_170 Hb_138229_010--Hb_002701_170 Hb_001186_120 Hb_001186_120 Hb_138229_010--Hb_001186_120 Hb_009296_060 Hb_009296_060 Hb_000699_050--Hb_009296_060 Hb_000343_040 Hb_000343_040 Hb_000699_050--Hb_000343_040 Hb_000473_070 Hb_000473_070 Hb_000699_050--Hb_000473_070 Hb_000457_130 Hb_000457_130 Hb_000699_050--Hb_000457_130 Hb_001366_050 Hb_001366_050 Hb_000699_050--Hb_001366_050 Hb_000753_180 Hb_000753_180 Hb_000699_050--Hb_000753_180 Hb_000336_280 Hb_000336_280 Hb_001226_100--Hb_000336_280 Hb_000215_130 Hb_000215_130 Hb_001226_100--Hb_000215_130 Hb_001226_100--Hb_001186_120 Hb_001832_110 Hb_001832_110 Hb_001226_100--Hb_001832_110 Hb_001439_040 Hb_001439_040 Hb_001226_100--Hb_001439_040 Hb_005333_210 Hb_005333_210 Hb_001226_100--Hb_005333_210 Hb_004446_060 Hb_004446_060 Hb_007007_130--Hb_004446_060 Hb_002851_070 Hb_002851_070 Hb_007007_130--Hb_002851_070 Hb_007007_130--Hb_000152_770 Hb_023771_030 Hb_023771_030 Hb_007007_130--Hb_023771_030 Hb_001500_080 Hb_001500_080 Hb_007007_130--Hb_001500_080 Hb_001437_260 Hb_001437_260 Hb_007007_130--Hb_001437_260 Hb_000934_240 Hb_000934_240 Hb_000152_770--Hb_000934_240 Hb_000152_770--Hb_004446_060 Hb_003592_060 Hb_003592_060 Hb_000152_770--Hb_003592_060 Hb_000152_770--Hb_001226_100 Hb_000152_770--Hb_001500_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.62206 17.7287 6.27774 0 0.0162837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32016 0.966522 2.01405 21.4778 16.4978

CAGE analysis