Hb_005455_070

Information

Type -
Description -
Location Contig5455: 91623-93122
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04440g
description POPTRDRAFT_750463; hypothetical protein
nr
ID XP_002299116.1
description hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
swissprot
ID Q9FFL1
description Polyamine transporter RMV1 OS=Arabidopsis thaliana GN=RMV1 PE=1 SV=1
trembl
ID B9GLG7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04440g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable polyamine transporter at3g13620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 052_N13.ab1: 92346-93040

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005455_070 0.0 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
2 Hb_002326_030 0.0698443841 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
3 Hb_001141_470 0.0794626861 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
4 Hb_001478_050 0.0848603686 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
5 Hb_008695_190 0.0966698259 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
6 Hb_001473_130 0.0978616048 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
7 Hb_001981_090 0.0994888533 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
8 Hb_012522_030 0.1031723659 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_010174_120 0.104969766 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
10 Hb_004724_040 0.1054479997 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
11 Hb_002387_060 0.1067285709 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002291_030 0.1082359289 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
13 Hb_002025_320 0.1085662663 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
14 Hb_000861_040 0.1108801662 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
15 Hb_001606_070 0.113876124 - - fimbrin, putative [Ricinus communis]
16 Hb_183963_020 0.115907833 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
17 Hb_002794_030 0.1161583737 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
18 Hb_001366_230 0.1162743637 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007229_060 0.1165771302 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
20 Hb_116349_150 0.1170658531 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]

Gene co-expression network

sample Hb_005455_070 Hb_005455_070 Hb_002326_030 Hb_002326_030 Hb_005455_070--Hb_002326_030 Hb_001141_470 Hb_001141_470 Hb_005455_070--Hb_001141_470 Hb_001478_050 Hb_001478_050 Hb_005455_070--Hb_001478_050 Hb_008695_190 Hb_008695_190 Hb_005455_070--Hb_008695_190 Hb_001473_130 Hb_001473_130 Hb_005455_070--Hb_001473_130 Hb_001981_090 Hb_001981_090 Hb_005455_070--Hb_001981_090 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_055335_010 Hb_055335_010 Hb_001141_470--Hb_055335_010 Hb_001141_470--Hb_012522_030 Hb_001141_470--Hb_002326_030 Hb_010174_120 Hb_010174_120 Hb_001141_470--Hb_010174_120 Hb_000419_040 Hb_000419_040 Hb_001141_470--Hb_000419_040 Hb_002835_170 Hb_002835_170 Hb_001478_050--Hb_002835_170 Hb_002291_030 Hb_002291_030 Hb_001478_050--Hb_002291_030 Hb_001478_050--Hb_002326_030 Hb_001478_050--Hb_008695_190 Hb_001478_050--Hb_007229_060 Hb_000072_280 Hb_000072_280 Hb_008695_190--Hb_000072_280 Hb_025087_010 Hb_025087_010 Hb_008695_190--Hb_025087_010 Hb_008695_190--Hb_001981_090 Hb_001366_230 Hb_001366_230 Hb_008695_190--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_008695_190--Hb_000809_040 Hb_004882_020 Hb_004882_020 Hb_008695_190--Hb_004882_020 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_001473_130--Hb_002352_010 Hb_002527_070 Hb_002527_070 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_001981_090--Hb_001366_220 Hb_001981_090--Hb_000809_040 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.0947 4.47231 1.33663 7.15276 23.4761 40.0003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.1511 44.2482 57.9765 12.4057 3.64933

CAGE analysis