Hb_005460_060

Information

Type -
Description -
Location Contig5460: 66197-70204
Sequence    

Annotation

kegg
ID rcu:RCOM_0938830
description hypothetical protein
nr
ID XP_012069292.1
description PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
swissprot
ID Q1LXS2
description Proteasome assembly chaperone 2 OS=Danio rerio GN=psmg2 PE=2 SV=1
trembl
ID A0A067LFY5
description Proteasome assembly chaperone 2 OS=Jatropha curcas GN=JCGZ_10033 PE=3 SV=1
Gene Ontology
ID GO:0000502
description proteasome assembly chaperone 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47985: 66330-70260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005460_060 0.0 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
2 Hb_000110_120 0.0783672016 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
3 Hb_004984_030 0.0879170787 - - protein with unknown function [Ricinus communis]
4 Hb_098315_020 0.0949291445 - - hypothetical protein M569_15712 [Genlisea aurea]
5 Hb_000077_180 0.0984109767 - - -
6 Hb_002060_010 0.1008011029 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
7 Hb_000946_090 0.1018414575 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
8 Hb_002301_160 0.1018684019 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
9 Hb_001377_450 0.1037995289 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
10 Hb_005306_070 0.1054114919 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
11 Hb_004230_020 0.1080069743 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
12 Hb_015299_030 0.1082582435 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
13 Hb_045003_010 0.1100100517 - - Stomatin-1, putative [Ricinus communis]
14 Hb_002314_010 0.1110014092 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
15 Hb_002968_040 0.1129831425 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
16 Hb_001322_070 0.113015877 - - protein with unknown function [Ricinus communis]
17 Hb_002303_060 0.1140142128 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000739_140 0.1166597646 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
19 Hb_001016_100 0.1166736248 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
20 Hb_001718_030 0.1168993314 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005460_060 Hb_005460_060 Hb_000110_120 Hb_000110_120 Hb_005460_060--Hb_000110_120 Hb_004984_030 Hb_004984_030 Hb_005460_060--Hb_004984_030 Hb_098315_020 Hb_098315_020 Hb_005460_060--Hb_098315_020 Hb_000077_180 Hb_000077_180 Hb_005460_060--Hb_000077_180 Hb_002060_010 Hb_002060_010 Hb_005460_060--Hb_002060_010 Hb_000946_090 Hb_000946_090 Hb_005460_060--Hb_000946_090 Hb_002301_160 Hb_002301_160 Hb_000110_120--Hb_002301_160 Hb_012305_130 Hb_012305_130 Hb_000110_120--Hb_012305_130 Hb_000009_290 Hb_000009_290 Hb_000110_120--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_000110_120--Hb_004627_030 Hb_000110_120--Hb_000077_180 Hb_000832_190 Hb_000832_190 Hb_004984_030--Hb_000832_190 Hb_002028_090 Hb_002028_090 Hb_004984_030--Hb_002028_090 Hb_000926_200 Hb_000926_200 Hb_004984_030--Hb_000926_200 Hb_004984_030--Hb_000946_090 Hb_040819_010 Hb_040819_010 Hb_004984_030--Hb_040819_010 Hb_098315_020--Hb_002060_010 Hb_015299_030 Hb_015299_030 Hb_098315_020--Hb_015299_030 Hb_098315_020--Hb_004984_030 Hb_001188_030 Hb_001188_030 Hb_098315_020--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_098315_020--Hb_001718_030 Hb_000377_120 Hb_000377_120 Hb_000077_180--Hb_000377_120 Hb_001410_060 Hb_001410_060 Hb_000077_180--Hb_001410_060 Hb_017491_020 Hb_017491_020 Hb_000077_180--Hb_017491_020 Hb_000077_180--Hb_000009_290 Hb_002060_010--Hb_001718_030 Hb_002060_010--Hb_001188_030 Hb_006256_030 Hb_006256_030 Hb_002060_010--Hb_006256_030 Hb_006355_040 Hb_006355_040 Hb_002060_010--Hb_006355_040 Hb_000327_380 Hb_000327_380 Hb_002060_010--Hb_000327_380 Hb_001804_080 Hb_001804_080 Hb_000946_090--Hb_001804_080 Hb_001931_010 Hb_001931_010 Hb_000946_090--Hb_001931_010 Hb_000419_020 Hb_000419_020 Hb_000946_090--Hb_000419_020 Hb_006326_040 Hb_006326_040 Hb_000946_090--Hb_006326_040 Hb_032202_100 Hb_032202_100 Hb_000946_090--Hb_032202_100 Hb_002968_040 Hb_002968_040 Hb_000946_090--Hb_002968_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83867 4.63099 18.1957 23.5964 4.55323 4.89971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6805 28.8451 11.3996 10.2466 9.88431

CAGE analysis