Hb_005463_020

Information

Type -
Description -
Location Contig5463: 10675-11748
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07100g
description POPTRDRAFT_242198; hypothetical protein
nr
ID XP_012070295.1
description PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
swissprot
ID Q9LF64
description RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1
trembl
ID B9I6S0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s07100g PE=4 SV=2
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47993: 10696-12344
cDNA
(Sanger)
(ID:Location)		 013_N05r.ab1: 11608-12344

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_020 0.0 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
2 Hb_002026_190 0.1148878553 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
3 Hb_000062_340 0.1186030412 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
4 Hb_002539_080 0.1201897263 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
5 Hb_054865_130 0.1212343933 - - acyltransferase, putative [Ricinus communis]
6 Hb_010589_040 0.121238977 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000260_060 0.1262541896 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
8 Hb_012573_030 0.1267013154 - - conserved hypothetical protein [Ricinus communis]
9 Hb_171554_080 0.1288523992 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_000975_300 0.1306915041 - - Rab2 [Hevea brasiliensis]
11 Hb_007047_010 0.1322235192 - - PREDICTED: expansin-A13 [Jatropha curcas]
12 Hb_000920_240 0.1415576102 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
13 Hb_009265_060 0.1428154241 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_005918_030 0.1443783271 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
15 Hb_001141_470 0.1471071659 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
16 Hb_008311_010 0.1493862231 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
17 Hb_001677_110 0.1499861647 - - Protein YIPF1, putative [Ricinus communis]
18 Hb_002498_100 0.15109777 - - bcr-associated protein, bap, putative [Ricinus communis]
19 Hb_000001_050 0.1511455783 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
20 Hb_010142_070 0.1513520341 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]

Gene co-expression network

sample Hb_005463_020 Hb_005463_020 Hb_002026_190 Hb_002026_190 Hb_005463_020--Hb_002026_190 Hb_000062_340 Hb_000062_340 Hb_005463_020--Hb_000062_340 Hb_002539_080 Hb_002539_080 Hb_005463_020--Hb_002539_080 Hb_054865_130 Hb_054865_130 Hb_005463_020--Hb_054865_130 Hb_010589_040 Hb_010589_040 Hb_005463_020--Hb_010589_040 Hb_000260_060 Hb_000260_060 Hb_005463_020--Hb_000260_060 Hb_007047_010 Hb_007047_010 Hb_002026_190--Hb_007047_010 Hb_003777_180 Hb_003777_180 Hb_002026_190--Hb_003777_180 Hb_002326_030 Hb_002326_030 Hb_002026_190--Hb_002326_030 Hb_000048_050 Hb_000048_050 Hb_002026_190--Hb_000048_050 Hb_002749_100 Hb_002749_100 Hb_002026_190--Hb_002749_100 Hb_000975_300 Hb_000975_300 Hb_000062_340--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_000062_340--Hb_007594_120 Hb_003632_010 Hb_003632_010 Hb_000062_340--Hb_003632_010 Hb_010142_070 Hb_010142_070 Hb_000062_340--Hb_010142_070 Hb_000302_220 Hb_000302_220 Hb_000062_340--Hb_000302_220 Hb_000735_130 Hb_000735_130 Hb_000062_340--Hb_000735_130 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_001711_030 Hb_001711_030 Hb_002539_080--Hb_001711_030 Hb_002527_070 Hb_002527_070 Hb_002539_080--Hb_002527_070 Hb_002735_060 Hb_002735_060 Hb_002539_080--Hb_002735_060 Hb_001863_480 Hb_001863_480 Hb_002539_080--Hb_001863_480 Hb_001439_170 Hb_001439_170 Hb_002539_080--Hb_001439_170 Hb_012573_030 Hb_012573_030 Hb_054865_130--Hb_012573_030 Hb_171554_080 Hb_171554_080 Hb_054865_130--Hb_171554_080 Hb_009265_060 Hb_009265_060 Hb_054865_130--Hb_009265_060 Hb_004048_050 Hb_004048_050 Hb_054865_130--Hb_004048_050 Hb_003020_310 Hb_003020_310 Hb_054865_130--Hb_003020_310 Hb_001946_320 Hb_001946_320 Hb_010589_040--Hb_001946_320 Hb_000861_040 Hb_000861_040 Hb_010589_040--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_010589_040--Hb_015934_020 Hb_012522_030 Hb_012522_030 Hb_010589_040--Hb_012522_030 Hb_002307_090 Hb_002307_090 Hb_010589_040--Hb_002307_090 Hb_002291_030 Hb_002291_030 Hb_010589_040--Hb_002291_030 Hb_003497_030 Hb_003497_030 Hb_000260_060--Hb_003497_030 Hb_001677_110 Hb_001677_110 Hb_000260_060--Hb_001677_110 Hb_024952_010 Hb_024952_010 Hb_000260_060--Hb_024952_010 Hb_010174_120 Hb_010174_120 Hb_000260_060--Hb_010174_120 Hb_002498_100 Hb_002498_100 Hb_000260_060--Hb_002498_100 Hb_000380_180 Hb_000380_180 Hb_000260_060--Hb_000380_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.4238 2.44805 6.44125 26.5091 23.9841 35.9226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.4125 58.539 110.729 5.48002 11.554

CAGE analysis