Hb_005463_040

Information

Type -
Description -
Location Contig5463: 24580-31111
Sequence    

Annotation

kegg
ID rcu:RCOM_1516720
description signal transducer, putative
nr
ID XP_002524004.1
description signal transducer, putative [Ricinus communis]
swissprot
ID Q8N9R8
description Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2
trembl
ID B9SDD5
description Signal transducer, putative OS=Ricinus communis GN=RCOM_1516720 PE=4 SV=1
Gene Ontology
ID GO:0003714
description protein scai

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_040 0.0 - - signal transducer, putative [Ricinus communis]
2 Hb_008221_140 0.0550235864 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
3 Hb_086639_030 0.0685890399 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
4 Hb_002183_090 0.0787342081 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
5 Hb_012675_060 0.0811731191 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
6 Hb_006031_020 0.083667844 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
7 Hb_000384_100 0.0845788434 - - hydrolase, putative [Ricinus communis]
8 Hb_000167_140 0.0854263454 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
9 Hb_012753_160 0.0861501276 - - ara4-interacting protein, putative [Ricinus communis]
10 Hb_004993_050 0.0862470401 - - -
11 Hb_000251_130 0.0869728976 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
12 Hb_156947_010 0.0872149688 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
13 Hb_011214_020 0.0873195455 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
14 Hb_000085_050 0.0919288953 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_000732_130 0.0926743777 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
16 Hb_007416_320 0.0933869744 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001663_050 0.0944165947 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
18 Hb_001269_170 0.0951699527 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
19 Hb_000175_060 0.0958609193 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
20 Hb_002878_020 0.0959318083 - - mitochondrial carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005463_040 Hb_005463_040 Hb_008221_140 Hb_008221_140 Hb_005463_040--Hb_008221_140 Hb_086639_030 Hb_086639_030 Hb_005463_040--Hb_086639_030 Hb_002183_090 Hb_002183_090 Hb_005463_040--Hb_002183_090 Hb_012675_060 Hb_012675_060 Hb_005463_040--Hb_012675_060 Hb_006031_020 Hb_006031_020 Hb_005463_040--Hb_006031_020 Hb_000384_100 Hb_000384_100 Hb_005463_040--Hb_000384_100 Hb_000676_180 Hb_000676_180 Hb_008221_140--Hb_000676_180 Hb_008221_140--Hb_002183_090 Hb_001226_040 Hb_001226_040 Hb_008221_140--Hb_001226_040 Hb_000167_140 Hb_000167_140 Hb_008221_140--Hb_000167_140 Hb_000085_050 Hb_000085_050 Hb_008221_140--Hb_000085_050 Hb_001663_050 Hb_001663_050 Hb_086639_030--Hb_001663_050 Hb_007416_320 Hb_007416_320 Hb_086639_030--Hb_007416_320 Hb_172932_010 Hb_172932_010 Hb_086639_030--Hb_172932_010 Hb_003053_020 Hb_003053_020 Hb_086639_030--Hb_003053_020 Hb_002878_020 Hb_002878_020 Hb_086639_030--Hb_002878_020 Hb_002183_090--Hb_000085_050 Hb_000976_170 Hb_000976_170 Hb_002183_090--Hb_000976_170 Hb_002183_090--Hb_000384_100 Hb_033834_040 Hb_033834_040 Hb_002183_090--Hb_033834_040 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_011867_010 Hb_011867_010 Hb_006031_020--Hb_011867_010 Hb_002226_070 Hb_002226_070 Hb_006031_020--Hb_002226_070 Hb_006031_020--Hb_002183_090 Hb_000059_370 Hb_000059_370 Hb_006031_020--Hb_000059_370 Hb_007416_030 Hb_007416_030 Hb_006031_020--Hb_007416_030 Hb_002686_020 Hb_002686_020 Hb_006031_020--Hb_002686_020 Hb_000479_090 Hb_000479_090 Hb_000384_100--Hb_000479_090 Hb_000384_100--Hb_000059_370 Hb_010068_020 Hb_010068_020 Hb_000384_100--Hb_010068_020 Hb_000230_510 Hb_000230_510 Hb_000384_100--Hb_000230_510 Hb_000920_110 Hb_000920_110 Hb_000384_100--Hb_000920_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.23973 3.20167 2.44388 2.70471 5.17201 4.47493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.28807 12.9159 9.46473 6.25229 3.60048

CAGE analysis