Hb_005463_060

Information

Type -
Description -
Location Contig5463: 35603-37305
Sequence    

Annotation

kegg
ID rcu:RCOM_1516690
description hypothetical protein
nr
ID XP_012070300.1
description PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SDD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1516690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48002: 35593-37309 , PASA_asmbl_48003: 36033-36430
cDNA
(Sanger)
(ID:Location)		 040_D01.ab1: 35593-37177

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_060 0.0 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
2 Hb_003988_040 0.081724223 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
3 Hb_003607_170 0.1026797004 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
4 Hb_002897_080 0.1066815797 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
5 Hb_003226_220 0.1091537762 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
6 Hb_003638_080 0.1205043518 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
7 Hb_000046_260 0.1231335271 - - acyl carrier protein, putative [Ricinus communis]
8 Hb_000134_020 0.1239622103 - - thioredoxin-like family protein [Hevea brasiliensis]
9 Hb_000312_090 0.1247732772 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
10 Hb_000526_150 0.1275805842 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
11 Hb_000617_090 0.1277540392 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
12 Hb_000159_070 0.1333285109 - - JHL03K20.4 [Jatropha curcas]
13 Hb_000212_470 0.1345886515 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
14 Hb_000236_460 0.1351433508 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
15 Hb_000975_250 0.1353292857 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
16 Hb_002716_090 0.1366370245 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
17 Hb_004958_050 0.1384077161 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
18 Hb_000272_050 0.1387669517 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
19 Hb_001488_400 0.1404147504 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
20 Hb_001221_310 0.1410363901 - - sec61 gamma subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_005463_060 Hb_005463_060 Hb_003988_040 Hb_003988_040 Hb_005463_060--Hb_003988_040 Hb_003607_170 Hb_003607_170 Hb_005463_060--Hb_003607_170 Hb_002897_080 Hb_002897_080 Hb_005463_060--Hb_002897_080 Hb_003226_220 Hb_003226_220 Hb_005463_060--Hb_003226_220 Hb_003638_080 Hb_003638_080 Hb_005463_060--Hb_003638_080 Hb_000046_260 Hb_000046_260 Hb_005463_060--Hb_000046_260 Hb_003988_040--Hb_003607_170 Hb_000159_070 Hb_000159_070 Hb_003988_040--Hb_000159_070 Hb_003988_040--Hb_002897_080 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090 Hb_000617_090 Hb_000617_090 Hb_003607_170--Hb_000617_090 Hb_008847_020 Hb_008847_020 Hb_003607_170--Hb_008847_020 Hb_010883_150 Hb_010883_150 Hb_003607_170--Hb_010883_150 Hb_000526_150 Hb_000526_150 Hb_003607_170--Hb_000526_150 Hb_002897_080--Hb_000526_150 Hb_002897_080--Hb_000312_090 Hb_009851_100 Hb_009851_100 Hb_002897_080--Hb_009851_100 Hb_002897_080--Hb_000159_070 Hb_002897_080--Hb_000617_090 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_003226_220--Hb_001571_090 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140 Hb_001045_080 Hb_001045_080 Hb_000046_260--Hb_001045_080 Hb_004116_080 Hb_004116_080 Hb_000046_260--Hb_004116_080 Hb_000046_260--Hb_000312_090 Hb_000045_190 Hb_000045_190 Hb_000046_260--Hb_000045_190 Hb_001687_040 Hb_001687_040 Hb_000046_260--Hb_001687_040 Hb_002214_050 Hb_002214_050 Hb_000046_260--Hb_002214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0226 2.69385 10.1958 17.3658 10.9943 27.6077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.1109 79.4295 13.8203 5.6039 1.78695

CAGE analysis