Hb_005463_100

Information

Type -
Description -
Location Contig5463: 56980-59016
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08400g
description POPTRDRAFT_1067100; hypothetical protein
nr
ID XP_002299574.2
description hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
swissprot
ID P26297
description D-lactate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / JCM 1002 / NBRC 13953 / NCIMB 11778) GN=ldhA PE=1 SV=3
trembl
ID B9GKR7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08400g PE=4 SV=2
Gene Ontology
ID GO:0016491
description glyoxylate hydroxypyruvate reductase hpr3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48005: 57037-58426 , PASA_asmbl_48006: 57037-59065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_100 0.0 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
2 Hb_002046_180 0.0539806603 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
3 Hb_012019_010 0.0563035513 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
4 Hb_002110_150 0.0576607037 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
5 Hb_000684_470 0.0579301566 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
6 Hb_000003_250 0.0609579951 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
7 Hb_009767_110 0.0664903093 - - -
8 Hb_065525_040 0.0667124532 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
9 Hb_000876_070 0.0687540138 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
10 Hb_009486_140 0.0702970686 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
11 Hb_002739_100 0.0709933331 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
12 Hb_001902_140 0.071729539 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
13 Hb_005779_060 0.0722617921 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
14 Hb_005116_160 0.0745411612 transcription factor TF Family: TRAF -
15 Hb_003371_090 0.0752518276 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
16 Hb_000331_550 0.0757494283 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
17 Hb_000703_350 0.0762895941 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
18 Hb_000732_010 0.0770995331 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
19 Hb_001369_730 0.0771174838 - - F5O11.10, putative isoform 1 [Theobroma cacao]
20 Hb_004724_080 0.0786125151 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005463_100 Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_005463_100--Hb_002046_180 Hb_012019_010 Hb_012019_010 Hb_005463_100--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_005463_100--Hb_002110_150 Hb_000684_470 Hb_000684_470 Hb_005463_100--Hb_000684_470 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_009767_110 Hb_009767_110 Hb_005463_100--Hb_009767_110 Hb_002046_180--Hb_012019_010 Hb_002046_180--Hb_002110_150 Hb_005779_060 Hb_005779_060 Hb_002046_180--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_002046_180--Hb_000876_070 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_012019_010--Hb_005779_060 Hb_012019_010--Hb_000876_070 Hb_012019_010--Hb_002110_150 Hb_000614_160 Hb_000614_160 Hb_012019_010--Hb_000614_160 Hb_002110_150--Hb_008725_260 Hb_002110_150--Hb_005779_060 Hb_000016_250 Hb_000016_250 Hb_002110_150--Hb_000016_250 Hb_002110_150--Hb_009767_110 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_000684_470--Hb_005779_060 Hb_156279_020 Hb_156279_020 Hb_000684_470--Hb_156279_020 Hb_000684_470--Hb_002046_180 Hb_000684_470--Hb_009767_110 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_044728_010 Hb_044728_010 Hb_009767_110--Hb_044728_010 Hb_006649_050 Hb_006649_050 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7055 16.6596 10.5447 15.1738 15.4738 14.1295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2082 22.0813 26.6887 12.9311 17.9413

CAGE analysis