Hb_005463_140

Information

Type -
Description -
Location Contig5463: 84227-88524
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15280g
description POPTRDRAFT_552094; hypothetical protein
nr
ID XP_012083519.1
description PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
swissprot
ID O64644
description Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1
trembl
ID E6NU26
description JHL05D22.7 protein OS=Jatropha curcas GN=JHL05D22.7 PE=4 SV=1
Gene Ontology
ID GO:0005730
description histone deacetylase complex subunit sap18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48015: 84381-84506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_140 0.0 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
2 Hb_072922_020 0.0567898375 - - SNARE-like superfamily protein [Theobroma cacao]
3 Hb_000224_140 0.0692122521 - - ribonuclease z, chloroplast, putative [Ricinus communis]
4 Hb_001155_040 0.0722195107 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
5 Hb_068056_030 0.0749888305 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
6 Hb_001512_080 0.0753063843 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
7 Hb_000302_280 0.0754162246 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
8 Hb_000789_230 0.0756603594 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
9 Hb_001076_020 0.0766023892 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
10 Hb_000817_030 0.0776738398 - - mak, putative [Ricinus communis]
11 Hb_000417_260 0.0794038918 - - protein with unknown function [Ricinus communis]
12 Hb_033153_060 0.0813916846 - - Transcription elongation factor, putative [Ricinus communis]
13 Hb_001005_080 0.0817168579 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
14 Hb_000384_120 0.0817824572 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
15 Hb_002631_020 0.0824444547 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
16 Hb_012490_050 0.0826779621 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
17 Hb_006452_040 0.0841057376 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
18 Hb_004459_040 0.0849827278 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
19 Hb_000087_130 0.085412208 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
20 Hb_000042_200 0.08566541 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_005463_140 Hb_005463_140 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280 Hb_000384_120 Hb_000384_120 Hb_072922_020--Hb_000384_120 Hb_000087_130 Hb_000087_130 Hb_072922_020--Hb_000087_130 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_000224_140--Hb_068056_030 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_001155_040--Hb_000087_130 Hb_006452_040 Hb_006452_040 Hb_001155_040--Hb_006452_040 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_007317_160 Hb_007317_160 Hb_001155_040--Hb_007317_160 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080 Hb_002918_290 Hb_002918_290 Hb_068056_030--Hb_002918_290 Hb_006569_100 Hb_006569_100 Hb_068056_030--Hb_006569_100 Hb_068056_030--Hb_001512_080 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_002110_200 Hb_002110_200 Hb_001512_080--Hb_002110_200 Hb_001512_080--Hb_000254_050 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120 Hb_001369_170 Hb_001369_170 Hb_000302_280--Hb_001369_170 Hb_000302_280--Hb_000384_120 Hb_003376_190 Hb_003376_190 Hb_000302_280--Hb_003376_190 Hb_000707_020 Hb_000707_020 Hb_000302_280--Hb_000707_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1069 7.72093 14.7304 34.9041 17.0321 22.602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.3944 97.3358 51.6074 29.7677 23.3503

CAGE analysis