Hb_005464_040

Information

Type -
Description -
Location Contig5464: 102051-114832
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9SX31
description Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005464_040 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000563_080 0.0344829221 - - -
3 Hb_001301_020 0.0368252623 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
4 Hb_000025_250 0.0490996929 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
5 Hb_003188_020 0.0537544022 - - chitinase, putative [Ricinus communis]
6 Hb_166232_010 0.0549221412 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
7 Hb_000446_100 0.0567069074 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
8 Hb_004254_070 0.0571075437 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
9 Hb_000589_280 0.0626628391 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
10 Hb_010839_040 0.0647938614 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
11 Hb_000462_100 0.0656034511 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
12 Hb_014034_020 0.065984911 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
13 Hb_020141_020 0.0661417149 - - -
14 Hb_018709_010 0.0663214932 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_100786_010 0.0683388835 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
16 Hb_002835_030 0.0685933549 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
17 Hb_001930_060 0.0734200543 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
18 Hb_002534_080 0.0746579265 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000500_190 0.0754357149 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
20 Hb_002758_020 0.0756326852 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]

Gene co-expression network

sample Hb_005464_040 Hb_005464_040 Hb_000563_080 Hb_000563_080 Hb_005464_040--Hb_000563_080 Hb_001301_020 Hb_001301_020 Hb_005464_040--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_005464_040--Hb_000025_250 Hb_003188_020 Hb_003188_020 Hb_005464_040--Hb_003188_020 Hb_166232_010 Hb_166232_010 Hb_005464_040--Hb_166232_010 Hb_000446_100 Hb_000446_100 Hb_005464_040--Hb_000446_100 Hb_000563_080--Hb_001301_020 Hb_000563_080--Hb_003188_020 Hb_000563_080--Hb_166232_010 Hb_004254_070 Hb_004254_070 Hb_000563_080--Hb_004254_070 Hb_000563_080--Hb_000446_100 Hb_001301_020--Hb_003188_020 Hb_001301_020--Hb_000446_100 Hb_001301_020--Hb_004254_070 Hb_014034_020 Hb_014034_020 Hb_001301_020--Hb_014034_020 Hb_000025_250--Hb_014034_020 Hb_000025_250--Hb_004254_070 Hb_018709_010 Hb_018709_010 Hb_000025_250--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_000025_250--Hb_020141_020 Hb_000025_250--Hb_000563_080 Hb_003188_020--Hb_014034_020 Hb_003188_020--Hb_004254_070 Hb_003188_020--Hb_000446_100 Hb_153208_010 Hb_153208_010 Hb_003188_020--Hb_153208_010 Hb_001930_060 Hb_001930_060 Hb_166232_010--Hb_001930_060 Hb_166232_010--Hb_001301_020 Hb_002758_020 Hb_002758_020 Hb_166232_010--Hb_002758_020 Hb_166232_010--Hb_003188_020 Hb_002835_030 Hb_002835_030 Hb_166232_010--Hb_002835_030 Hb_000446_100--Hb_004254_070 Hb_000500_190 Hb_000500_190 Hb_000446_100--Hb_000500_190 Hb_000446_100--Hb_014034_020 Hb_001456_040 Hb_001456_040 Hb_000446_100--Hb_001456_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0510848 0.0096862 0.0276573 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.17317 0

CAGE analysis