Hb_005470_020

Information

Type -
Description -
Location Contig5470: 10156-15783
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09200g
description POPTRDRAFT_570176; hypothetical protein
nr
ID XP_012079947.1
description PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
swissprot
ID Q04836
description 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1
trembl
ID A0A067K455
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11382 PE=4 SV=1
Gene Ontology
ID GO:0019013
description 28 kda chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48016: 10162-12792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005470_020 0.0 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
2 Hb_048141_020 0.0895028958 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
3 Hb_000084_280 0.0907797652 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_000816_100 0.0955867605 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000015_100 0.1013009457 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_000948_170 0.1018112147 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
7 Hb_000300_120 0.1055131622 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
8 Hb_012286_010 0.1101036367 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
9 Hb_000627_250 0.112200886 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
10 Hb_023278_010 0.1149534425 - - Chaperone protein DnaJ [Glycine soja]
11 Hb_011931_060 0.1161223774 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
12 Hb_001898_090 0.1222276401 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
13 Hb_031284_070 0.1224215683 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
14 Hb_003388_030 0.1226133127 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
15 Hb_004987_070 0.1245593222 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
16 Hb_018118_010 0.1285818797 - - DNA polymerase I, putative [Ricinus communis]
17 Hb_004218_280 0.1289470645 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
18 Hb_009252_040 0.1293086035 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
19 Hb_001259_020 0.1294483907 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
20 Hb_021346_030 0.1333388549 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]

Gene co-expression network

sample Hb_005470_020 Hb_005470_020 Hb_048141_020 Hb_048141_020 Hb_005470_020--Hb_048141_020 Hb_000084_280 Hb_000084_280 Hb_005470_020--Hb_000084_280 Hb_000816_100 Hb_000816_100 Hb_005470_020--Hb_000816_100 Hb_000015_100 Hb_000015_100 Hb_005470_020--Hb_000015_100 Hb_000948_170 Hb_000948_170 Hb_005470_020--Hb_000948_170 Hb_000300_120 Hb_000300_120 Hb_005470_020--Hb_000300_120 Hb_048141_020--Hb_000816_100 Hb_023278_010 Hb_023278_010 Hb_048141_020--Hb_023278_010 Hb_048141_020--Hb_000015_100 Hb_001489_050 Hb_001489_050 Hb_048141_020--Hb_001489_050 Hb_011931_060 Hb_011931_060 Hb_048141_020--Hb_011931_060 Hb_000084_280--Hb_000948_170 Hb_008206_060 Hb_008206_060 Hb_000084_280--Hb_008206_060 Hb_000084_280--Hb_000015_100 Hb_000084_280--Hb_048141_020 Hb_000084_280--Hb_000816_100 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_001259_020 Hb_001259_020 Hb_000816_100--Hb_001259_020 Hb_000816_100--Hb_023278_010 Hb_021346_030 Hb_021346_030 Hb_000816_100--Hb_021346_030 Hb_000816_100--Hb_011931_060 Hb_000015_100--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_000015_100--Hb_000627_250 Hb_000033_110 Hb_000033_110 Hb_000015_100--Hb_000033_110 Hb_031284_070 Hb_031284_070 Hb_000015_100--Hb_031284_070 Hb_000015_100--Hb_000816_100 Hb_000015_100--Hb_008206_060 Hb_000948_170--Hb_031284_070 Hb_000948_170--Hb_021346_030 Hb_000948_170--Hb_000627_250 Hb_001205_300 Hb_001205_300 Hb_000948_170--Hb_001205_300 Hb_000948_170--Hb_000816_100 Hb_000331_560 Hb_000331_560 Hb_000300_120--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_000300_120--Hb_018118_010 Hb_000041_090 Hb_000041_090 Hb_000300_120--Hb_000041_090 Hb_006295_020 Hb_006295_020 Hb_000300_120--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_000300_120--Hb_003203_030 Hb_000300_120--Hb_000816_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.991 44.2888 62.296 38.0697 96.9003 153.797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.3146 27.9182 47.1949 53.8766 204.835

CAGE analysis