Hb_005474_060

Information

Type -
Description -
Location Contig5474: 86078-93350
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G019700g
description hypothetical protein
nr
ID XP_007131519.1
description hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
swissprot
ID A2RVP7
description Mitochondrial import inner membrane translocase subunit TIM22-1 OS=Arabidopsis thaliana GN=TIM22-1 PE=1 SV=1
trembl
ID V7AF85
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G019700g PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48023: 86166-93352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005474_060 0.0 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
2 Hb_003994_040 0.069995776 - - -
3 Hb_000905_180 0.0763427712 - - 60S ribosomal protein L31A [Hevea brasiliensis]
4 Hb_002687_170 0.0774167319 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
5 Hb_011644_030 0.0793785158 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
6 Hb_003053_030 0.0817623878 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
7 Hb_000181_300 0.0899205471 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
8 Hb_001780_050 0.090127299 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
9 Hb_000976_250 0.0913894496 - - -
10 Hb_001076_020 0.0914280137 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
11 Hb_000389_080 0.0925851645 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
12 Hb_000163_130 0.0959290083 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
13 Hb_000441_190 0.09598818 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
14 Hb_000236_150 0.0974472137 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
15 Hb_001633_030 0.0975009686 - - -
16 Hb_000224_140 0.0989264462 - - ribonuclease z, chloroplast, putative [Ricinus communis]
17 Hb_001634_040 0.0991411636 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
18 Hb_005914_200 0.0995575495 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
19 Hb_012539_020 0.0998020074 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
20 Hb_017948_010 0.100292376 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005474_060 Hb_005474_060 Hb_003994_040 Hb_003994_040 Hb_005474_060--Hb_003994_040 Hb_000905_180 Hb_000905_180 Hb_005474_060--Hb_000905_180 Hb_002687_170 Hb_002687_170 Hb_005474_060--Hb_002687_170 Hb_011644_030 Hb_011644_030 Hb_005474_060--Hb_011644_030 Hb_003053_030 Hb_003053_030 Hb_005474_060--Hb_003053_030 Hb_000181_300 Hb_000181_300 Hb_005474_060--Hb_000181_300 Hb_003455_040 Hb_003455_040 Hb_003994_040--Hb_003455_040 Hb_017948_010 Hb_017948_010 Hb_003994_040--Hb_017948_010 Hb_003994_040--Hb_003053_030 Hb_000173_220 Hb_000173_220 Hb_003994_040--Hb_000173_220 Hb_003994_040--Hb_011644_030 Hb_000163_130 Hb_000163_130 Hb_000905_180--Hb_000163_130 Hb_000236_150 Hb_000236_150 Hb_000905_180--Hb_000236_150 Hb_001016_090 Hb_001016_090 Hb_000905_180--Hb_001016_090 Hb_003185_050 Hb_003185_050 Hb_000905_180--Hb_003185_050 Hb_002374_390 Hb_002374_390 Hb_000905_180--Hb_002374_390 Hb_001158_230 Hb_001158_230 Hb_002687_170--Hb_001158_230 Hb_004459_040 Hb_004459_040 Hb_002687_170--Hb_004459_040 Hb_005181_030 Hb_005181_030 Hb_002687_170--Hb_005181_030 Hb_009421_040 Hb_009421_040 Hb_002687_170--Hb_009421_040 Hb_002687_170--Hb_003994_040 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_003053_030--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_003053_030--Hb_148200_010 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_000181_300--Hb_001191_090 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90813 1.63859 3.20912 4.62068 3.00687 8.14214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4402 26.1269 14.8478 4.98712 5.38689

CAGE analysis