Hb_005479_010

Information

Type -
Description -
Location Contig5479: 25767-26861
Sequence    

Annotation

kegg
ID cic:CICLE_v10017543mg
description hypothetical protein
nr
ID XP_011004530.1
description PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
swissprot
ID -
description -
trembl
ID V4UG70
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017543mg PE=4 SV=1
Gene Ontology
ID GO:0046872
description pollen-specific leucine-rich repeat extensin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48030: 25691-26928 , PASA_asmbl_48031: 25691-26928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005479_010 0.0 - - PREDICTED: uncharacterized protein LOC105111002 [Populus euphratica]
2 Hb_001793_050 0.1736231453 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
3 Hb_002097_100 0.1743827545 - - protein with unknown function [Ricinus communis]
4 Hb_000260_590 0.1744503025 - - electron transporter, putative [Ricinus communis]
5 Hb_001976_060 0.1747176583 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
6 Hb_001623_080 0.1799784454 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_001195_130 0.1942361616 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000347_190 0.1958117284 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
9 Hb_000505_080 0.1958673852 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
10 Hb_188063_030 0.1992842609 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
11 Hb_002542_060 0.2001726004 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
12 Hb_004899_340 0.2017118001 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_011021_010 0.202031692 - - kinase, putative [Ricinus communis]
14 Hb_005063_080 0.2030749633 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
15 Hb_001675_050 0.2032784333 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
16 Hb_001221_190 0.2044932444 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
17 Hb_000866_340 0.2064688741 - - DNA binding protein, putative [Ricinus communis]
18 Hb_001597_020 0.2078343716 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
19 Hb_105033_010 0.2091934085 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_000152_490 0.2093503238 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]

Gene co-expression network

sample Hb_005479_010 Hb_005479_010 Hb_001793_050 Hb_001793_050 Hb_005479_010--Hb_001793_050 Hb_002097_100 Hb_002097_100 Hb_005479_010--Hb_002097_100 Hb_000260_590 Hb_000260_590 Hb_005479_010--Hb_000260_590 Hb_001976_060 Hb_001976_060 Hb_005479_010--Hb_001976_060 Hb_001623_080 Hb_001623_080 Hb_005479_010--Hb_001623_080 Hb_001195_130 Hb_001195_130 Hb_005479_010--Hb_001195_130 Hb_000665_270 Hb_000665_270 Hb_001793_050--Hb_000665_270 Hb_071079_020 Hb_071079_020 Hb_001793_050--Hb_071079_020 Hb_000336_200 Hb_000336_200 Hb_001793_050--Hb_000336_200 Hb_005063_080 Hb_005063_080 Hb_001793_050--Hb_005063_080 Hb_002811_050 Hb_002811_050 Hb_001793_050--Hb_002811_050 Hb_001269_500 Hb_001269_500 Hb_001793_050--Hb_001269_500 Hb_026549_070 Hb_026549_070 Hb_002097_100--Hb_026549_070 Hb_004306_110 Hb_004306_110 Hb_002097_100--Hb_004306_110 Hb_000815_230 Hb_000815_230 Hb_002097_100--Hb_000815_230 Hb_001847_050 Hb_001847_050 Hb_002097_100--Hb_001847_050 Hb_002053_050 Hb_002053_050 Hb_002097_100--Hb_002053_050 Hb_001579_300 Hb_001579_300 Hb_002097_100--Hb_001579_300 Hb_000088_150 Hb_000088_150 Hb_000260_590--Hb_000088_150 Hb_000505_080 Hb_000505_080 Hb_000260_590--Hb_000505_080 Hb_000866_340 Hb_000866_340 Hb_000260_590--Hb_000866_340 Hb_000260_590--Hb_005063_080 Hb_004542_020 Hb_004542_020 Hb_000260_590--Hb_004542_020 Hb_001976_060--Hb_001623_080 Hb_001049_150 Hb_001049_150 Hb_001976_060--Hb_001049_150 Hb_001675_050 Hb_001675_050 Hb_001976_060--Hb_001675_050 Hb_000062_400 Hb_000062_400 Hb_001976_060--Hb_000062_400 Hb_000117_030 Hb_000117_030 Hb_001976_060--Hb_000117_030 Hb_004899_340 Hb_004899_340 Hb_001976_060--Hb_004899_340 Hb_001623_080--Hb_001049_150 Hb_001623_080--Hb_004899_340 Hb_000959_300 Hb_000959_300 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010 Hb_001195_130--Hb_001847_050 Hb_001195_130--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_001195_130--Hb_006925_050 Hb_000856_400 Hb_000856_400 Hb_001195_130--Hb_000856_400 Hb_004730_020 Hb_004730_020 Hb_001195_130--Hb_004730_020 Hb_009222_110 Hb_009222_110 Hb_001195_130--Hb_009222_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.65196 2.54262 16.5407 26.6492 4.25743 5.38915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.662301 1.15715 0.312022 0.89201 26.9934

CAGE analysis