Hb_005479_050

Information

Type -
Description -
Location Contig5479: 76169-77080
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005479_050 0.0 - - -
2 Hb_080081_010 0.181252758 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
3 Hb_000244_140 0.1872537154 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
4 Hb_001486_050 0.2080572422 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
5 Hb_006816_110 0.2156321047 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
6 Hb_000172_470 0.2184202798 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
7 Hb_001335_040 0.2202832245 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000092_050 0.22839836 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
9 Hb_000577_070 0.2293821881 - - -
10 Hb_000500_070 0.2309977396 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
11 Hb_001296_010 0.2328283586 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000220_020 0.2337426629 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
13 Hb_002193_070 0.2345484777 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_009486_030 0.2362733583 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
15 Hb_002675_170 0.2376527328 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
16 Hb_004925_030 0.2386985238 - - EXORDIUM like 1 [Theobroma cacao]
17 Hb_011900_040 0.2396624706 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
18 Hb_074836_020 0.2405787289 - - unnamed protein product [Vitis vinifera]
19 Hb_000302_110 0.2417937058 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_019053_050 0.2429156354 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005479_050 Hb_005479_050 Hb_080081_010 Hb_080081_010 Hb_005479_050--Hb_080081_010 Hb_000244_140 Hb_000244_140 Hb_005479_050--Hb_000244_140 Hb_001486_050 Hb_001486_050 Hb_005479_050--Hb_001486_050 Hb_006816_110 Hb_006816_110 Hb_005479_050--Hb_006816_110 Hb_000172_470 Hb_000172_470 Hb_005479_050--Hb_000172_470 Hb_001335_040 Hb_001335_040 Hb_005479_050--Hb_001335_040 Hb_080081_010--Hb_000244_140 Hb_000092_050 Hb_000092_050 Hb_080081_010--Hb_000092_050 Hb_080081_010--Hb_006816_110 Hb_080081_010--Hb_000172_470 Hb_000220_020 Hb_000220_020 Hb_080081_010--Hb_000220_020 Hb_000244_140--Hb_000092_050 Hb_000577_070 Hb_000577_070 Hb_000244_140--Hb_000577_070 Hb_000244_140--Hb_000172_470 Hb_074836_020 Hb_074836_020 Hb_000244_140--Hb_074836_020 Hb_184541_010 Hb_184541_010 Hb_001486_050--Hb_184541_010 Hb_007741_090 Hb_007741_090 Hb_001486_050--Hb_007741_090 Hb_004525_080 Hb_004525_080 Hb_001486_050--Hb_004525_080 Hb_007575_090 Hb_007575_090 Hb_001486_050--Hb_007575_090 Hb_000139_110 Hb_000139_110 Hb_001486_050--Hb_000139_110 Hb_001486_050--Hb_006816_110 Hb_009486_030 Hb_009486_030 Hb_006816_110--Hb_009486_030 Hb_000500_070 Hb_000500_070 Hb_006816_110--Hb_000500_070 Hb_000521_070 Hb_000521_070 Hb_006816_110--Hb_000521_070 Hb_006816_110--Hb_000172_470 Hb_000172_470--Hb_000500_070 Hb_000172_470--Hb_000577_070 Hb_000172_470--Hb_000092_050 Hb_000172_470--Hb_074836_020 Hb_019053_050 Hb_019053_050 Hb_001335_040--Hb_019053_050 Hb_011900_040 Hb_011900_040 Hb_001335_040--Hb_011900_040 Hb_000083_260 Hb_000083_260 Hb_001335_040--Hb_000083_260 Hb_003528_090 Hb_003528_090 Hb_001335_040--Hb_003528_090 Hb_006889_010 Hb_006889_010 Hb_001335_040--Hb_006889_010 Hb_001157_120 Hb_001157_120 Hb_001335_040--Hb_001157_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01417 1.10041 3.10798 77.7846 0 7.63076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.220365 0 4.35917 3.14991 5.97501

CAGE analysis