Hb_005483_010

Information

Type -
Description -
Location Contig5483: 11042-18329
Sequence    

Annotation

kegg
ID rcu:RCOM_1045930
description replication factor A 1, rfa1, putative
nr
ID XP_012077021.1
description PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
swissprot
ID Q9SKI4
description Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana GN=RPA1A PE=1 SV=1
trembl
ID B9RK18
description Replication factor A 1, rfa1, putative OS=Ricinus communis GN=RCOM_1045930 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 70 kda dna-binding subunit a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005483_010 0.0 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
2 Hb_012286_070 0.1499238665 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
3 Hb_000450_140 0.1499381971 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
4 Hb_020818_010 0.1503088965 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
5 Hb_070247_010 0.1505733852 - - hypothetical protein [Pseudomonas tolaasii]
6 Hb_010760_010 0.1516604972 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_001545_250 0.1537603871 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
8 Hb_000201_020 0.1538657722 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
9 Hb_000971_060 0.1544265495 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_001403_030 0.1558316824 - - -
11 Hb_004785_010 0.1579171573 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_000174_190 0.1593562015 - - unnamed protein product [Coffea canephora]
13 Hb_076908_010 0.1596184491 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
14 Hb_083493_050 0.1598093047 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
15 Hb_149358_010 0.160320877 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_001110_020 0.1611743281 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
17 Hb_139388_010 0.1613790298 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
18 Hb_000351_030 0.1615019825 - - putative NBS-LRR type disease resistance protein [Prunus persica]
19 Hb_181535_010 0.1624404828 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_030928_010 0.1627214571 - - -

Gene co-expression network

sample Hb_005483_010 Hb_005483_010 Hb_012286_070 Hb_012286_070 Hb_005483_010--Hb_012286_070 Hb_000450_140 Hb_000450_140 Hb_005483_010--Hb_000450_140 Hb_020818_010 Hb_020818_010 Hb_005483_010--Hb_020818_010 Hb_070247_010 Hb_070247_010 Hb_005483_010--Hb_070247_010 Hb_010760_010 Hb_010760_010 Hb_005483_010--Hb_010760_010 Hb_001545_250 Hb_001545_250 Hb_005483_010--Hb_001545_250 Hb_012286_070--Hb_000450_140 Hb_012286_070--Hb_020818_010 Hb_012286_070--Hb_070247_010 Hb_012286_070--Hb_010760_010 Hb_012286_070--Hb_001545_250 Hb_000201_020 Hb_000201_020 Hb_012286_070--Hb_000201_020 Hb_000450_140--Hb_020818_010 Hb_000450_140--Hb_070247_010 Hb_000450_140--Hb_010760_010 Hb_000450_140--Hb_001545_250 Hb_000450_140--Hb_000201_020 Hb_020818_010--Hb_070247_010 Hb_020818_010--Hb_010760_010 Hb_020818_010--Hb_001545_250 Hb_020818_010--Hb_000201_020 Hb_070247_010--Hb_010760_010 Hb_070247_010--Hb_001545_250 Hb_070247_010--Hb_000201_020 Hb_010760_010--Hb_001545_250 Hb_010760_010--Hb_000201_020 Hb_001545_250--Hb_000201_020 Hb_000971_060 Hb_000971_060 Hb_001545_250--Hb_000971_060 Hb_001403_030 Hb_001403_030 Hb_001545_250--Hb_001403_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0176277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.340611 0.0487677 0

CAGE analysis