Hb_005485_070

Information

Type -
Description -
Location Contig5485: 117287-123690
Sequence    

Annotation

kegg
ID rcu:RCOM_0952830
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative (EC:2.1.1.14)
nr
ID XP_002515852.1
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
swissprot
ID Q42699
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1
trembl
ID B9RQ33
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative OS=Ricinus communis GN=RCOM_0952830 PE=3 SV=1
Gene Ontology
ID GO:0005829
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48054: 117496-123492 , PASA_asmbl_48055: 117301-123593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005485_070 0.0 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
2 Hb_000116_240 0.0794199113 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
3 Hb_000318_170 0.0892891076 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
4 Hb_008695_150 0.1007535777 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
5 Hb_000590_070 0.1080231715 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
6 Hb_001277_400 0.1086903611 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
7 Hb_003106_110 0.1124064131 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]
8 Hb_000085_380 0.1166533432 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007575_030 0.1209325651 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
10 Hb_001894_010 0.1215216737 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
11 Hb_005333_080 0.122266685 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000309_030 0.1230300356 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
13 Hb_153257_010 0.1240290427 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
14 Hb_001221_390 0.1242705941 - - Phospholipase C 4 precursor, putative [Ricinus communis]
15 Hb_000438_010 0.1284169009 - - -
16 Hb_000803_120 0.1314967404 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
17 Hb_000042_380 0.1319295569 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
18 Hb_000230_360 0.1322944795 - - PREDICTED: BI1-like protein [Jatropha curcas]
19 Hb_005181_060 0.1328725151 - - ATP-citrate synthase, putative [Ricinus communis]
20 Hb_012760_090 0.1337630095 - - Aspartic proteinase-like protein 1 [Morus notabilis]

Gene co-expression network

sample Hb_005485_070 Hb_005485_070 Hb_000116_240 Hb_000116_240 Hb_005485_070--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_000590_070 Hb_000590_070 Hb_005485_070--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_005485_070--Hb_001277_400 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_000309_030 Hb_000309_030 Hb_000116_240--Hb_000309_030 Hb_000116_240--Hb_000590_070 Hb_000116_240--Hb_001277_400 Hb_000261_310 Hb_000261_310 Hb_000116_240--Hb_000261_310 Hb_000116_240--Hb_000318_170 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000318_170--Hb_000309_030 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_007575_030 Hb_007575_030 Hb_000318_170--Hb_007575_030 Hb_000042_380 Hb_000042_380 Hb_008695_150--Hb_000042_380 Hb_005333_080 Hb_005333_080 Hb_008695_150--Hb_005333_080 Hb_008695_150--Hb_000116_240 Hb_001439_010 Hb_001439_010 Hb_008695_150--Hb_001439_010 Hb_008695_150--Hb_000731_210 Hb_005181_060 Hb_005181_060 Hb_000590_070--Hb_005181_060 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000590_070--Hb_000309_030 Hb_000120_740 Hb_000120_740 Hb_000590_070--Hb_000120_740 Hb_001277_400--Hb_007575_030 Hb_001277_400--Hb_000042_380 Hb_004883_020 Hb_004883_020 Hb_001277_400--Hb_004883_020 Hb_001277_400--Hb_000590_070 Hb_000739_160 Hb_000739_160 Hb_003106_110--Hb_000739_160 Hb_015306_010 Hb_015306_010 Hb_003106_110--Hb_015306_010 Hb_002301_370 Hb_002301_370 Hb_003106_110--Hb_002301_370 Hb_000085_380 Hb_000085_380 Hb_003106_110--Hb_000085_380 Hb_000760_080 Hb_000760_080 Hb_003106_110--Hb_000760_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89862 29.2661 67.0252 80.8715 7.56481 6.48885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46881 1.91906 3.14794 77.94 49.2788

CAGE analysis