Hb_005488_140

Information

Type -
Description -
Location Contig5488: 109880-115795
Sequence    

Annotation

kegg
ID rcu:RCOM_1517490
description 30S ribosomal protein S5, putative
nr
ID XP_002524031.1
description 30S ribosomal protein S5, putative [Ricinus communis]
swissprot
ID Q5GWV1
description 30S ribosomal protein S5 OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN=rpsE PE=3 SV=1
trembl
ID B9SDG2
description 30S ribosomal protein S5, putative OS=Ricinus communis GN=RCOM_1517490 PE=3 SV=1
Gene Ontology
ID GO:0005768
description 30s ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48117: 109957-115837 , PASA_asmbl_48118: 111973-112268 , PASA_asmbl_48119: 111140-111782 , PASA_asmbl_48121: 116534-117209
cDNA
(Sanger)
(ID:Location)		 023_N04.ab1: 115403-115790

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_140 0.0 - - 30S ribosomal protein S5, putative [Ricinus communis]
2 Hb_000185_070 0.0792557353 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000302_270 0.0848207029 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
4 Hb_180424_010 0.0848754302 - - Charged multivesicular body protein, putative [Ricinus communis]
5 Hb_153553_030 0.0855773037 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
6 Hb_000010_110 0.0862109302 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
7 Hb_003001_080 0.0883950119 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
8 Hb_012762_030 0.0911260806 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
9 Hb_027428_010 0.0933321631 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
10 Hb_000010_240 0.0951781215 - - Protein bem46, putative [Ricinus communis]
11 Hb_002600_020 0.0956011711 - - unnamed protein product [Vitis vinifera]
12 Hb_001163_050 0.096024962 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
13 Hb_001133_120 0.0963093488 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
14 Hb_000684_380 0.0964995049 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
15 Hb_000039_220 0.0984118214 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
16 Hb_003052_190 0.0985996965 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
17 Hb_002872_030 0.0988096767 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
18 Hb_164010_040 0.098979868 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_000869_080 0.0990229095 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
20 Hb_024958_010 0.0992181566 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]

Gene co-expression network

sample Hb_005488_140 Hb_005488_140 Hb_000185_070 Hb_000185_070 Hb_005488_140--Hb_000185_070 Hb_000302_270 Hb_000302_270 Hb_005488_140--Hb_000302_270 Hb_180424_010 Hb_180424_010 Hb_005488_140--Hb_180424_010 Hb_153553_030 Hb_153553_030 Hb_005488_140--Hb_153553_030 Hb_000010_110 Hb_000010_110 Hb_005488_140--Hb_000010_110 Hb_003001_080 Hb_003001_080 Hb_005488_140--Hb_003001_080 Hb_000185_070--Hb_000302_270 Hb_027428_010 Hb_027428_010 Hb_000185_070--Hb_027428_010 Hb_005337_090 Hb_005337_090 Hb_000185_070--Hb_005337_090 Hb_001981_030 Hb_001981_030 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_002872_030 Hb_002872_030 Hb_000185_070--Hb_002872_030 Hb_000521_320 Hb_000521_320 Hb_000302_270--Hb_000521_320 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000010_400 Hb_000010_400 Hb_000302_270--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_000000_210 Hb_000000_210 Hb_180424_010--Hb_000000_210 Hb_000853_430 Hb_000853_430 Hb_180424_010--Hb_000853_430 Hb_000856_380 Hb_000856_380 Hb_180424_010--Hb_000856_380 Hb_004410_080 Hb_004410_080 Hb_180424_010--Hb_004410_080 Hb_180424_010--Hb_004678_040 Hb_003621_020 Hb_003621_020 Hb_153553_030--Hb_003621_020 Hb_002600_020 Hb_002600_020 Hb_153553_030--Hb_002600_020 Hb_005588_030 Hb_005588_030 Hb_153553_030--Hb_005588_030 Hb_000866_410 Hb_000866_410 Hb_153553_030--Hb_000866_410 Hb_000638_290 Hb_000638_290 Hb_153553_030--Hb_000638_290 Hb_000009_530 Hb_000009_530 Hb_153553_030--Hb_000009_530 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_001163_050 Hb_001163_050 Hb_003001_080--Hb_001163_050 Hb_000340_400 Hb_000340_400 Hb_003001_080--Hb_000340_400 Hb_152175_010 Hb_152175_010 Hb_003001_080--Hb_152175_010 Hb_008453_140 Hb_008453_140 Hb_003001_080--Hb_008453_140 Hb_004837_180 Hb_004837_180 Hb_003001_080--Hb_004837_180 Hb_032202_140 Hb_032202_140 Hb_003001_080--Hb_032202_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.2892 33.3603 41.2689 18.0976 17.6862 26.3805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1815 41.9729 26.7051 23.9295 15.5475

CAGE analysis