Hb_005488_150

Information

Type -
Description -
Location Contig5488: 116514-121104
Sequence    

Annotation

kegg
ID rcu:RCOM_1517480
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002524030.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LER0
description Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=3 SV=2
trembl
ID B9SDG1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1517480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48124: 118438-118637 , PASA_asmbl_48126: 120264-120546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_150 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_148909_030 0.0569662974 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
3 Hb_000183_020 0.0759521459 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
4 Hb_000069_320 0.0771849514 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
5 Hb_004453_110 0.0796904617 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
6 Hb_009503_030 0.0798247726 - - protein dimerization, putative [Ricinus communis]
7 Hb_000429_220 0.0802245565 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
8 Hb_000671_070 0.0818905509 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
9 Hb_000025_320 0.0828024948 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
10 Hb_027380_140 0.0834245498 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
11 Hb_014267_010 0.0841230813 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
12 Hb_002329_040 0.0855043372 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
13 Hb_008024_030 0.0857978007 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
14 Hb_006420_040 0.0858381428 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
15 Hb_003044_020 0.0862992679 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
16 Hb_000740_100 0.0871580077 - - calpain, putative [Ricinus communis]
17 Hb_000960_100 0.0875300834 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
18 Hb_001550_060 0.0882672315 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
19 Hb_003029_110 0.0891015528 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
20 Hb_001195_320 0.0893337791 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]

Gene co-expression network

sample Hb_005488_150 Hb_005488_150 Hb_148909_030 Hb_148909_030 Hb_005488_150--Hb_148909_030 Hb_000183_020 Hb_000183_020 Hb_005488_150--Hb_000183_020 Hb_000069_320 Hb_000069_320 Hb_005488_150--Hb_000069_320 Hb_004453_110 Hb_004453_110 Hb_005488_150--Hb_004453_110 Hb_009503_030 Hb_009503_030 Hb_005488_150--Hb_009503_030 Hb_000429_220 Hb_000429_220 Hb_005488_150--Hb_000429_220 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_111985_080 Hb_111985_080 Hb_148909_030--Hb_111985_080 Hb_133047_010 Hb_133047_010 Hb_148909_030--Hb_133047_010 Hb_002392_030 Hb_002392_030 Hb_148909_030--Hb_002392_030 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_002329_040 Hb_002329_040 Hb_000183_020--Hb_002329_040 Hb_003044_020 Hb_003044_020 Hb_000183_020--Hb_003044_020 Hb_001195_320 Hb_001195_320 Hb_000183_020--Hb_001195_320 Hb_003362_070 Hb_003362_070 Hb_000183_020--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000183_020--Hb_000166_130 Hb_000922_370 Hb_000922_370 Hb_000183_020--Hb_000922_370 Hb_000041_090 Hb_000041_090 Hb_000069_320--Hb_000041_090 Hb_000069_320--Hb_148909_030 Hb_000406_020 Hb_000406_020 Hb_000069_320--Hb_000406_020 Hb_006295_020 Hb_006295_020 Hb_000069_320--Hb_006295_020 Hb_001440_040 Hb_001440_040 Hb_000069_320--Hb_001440_040 Hb_004453_110--Hb_000429_220 Hb_005731_090 Hb_005731_090 Hb_004453_110--Hb_005731_090 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_002174_020 Hb_002174_020 Hb_004453_110--Hb_002174_020 Hb_008112_030 Hb_008112_030 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_003785_040 Hb_003785_040 Hb_009503_030--Hb_003785_040 Hb_000574_440 Hb_000574_440 Hb_009503_030--Hb_000574_440 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_009175_020 Hb_009175_020 Hb_000429_220--Hb_009175_020 Hb_000429_220--Hb_089140_050 Hb_000429_220--Hb_009503_030 Hb_027380_140 Hb_027380_140 Hb_000429_220--Hb_027380_140 Hb_002823_030 Hb_002823_030 Hb_000429_220--Hb_002823_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.956295 1.18254 0.733771 0.58457 1.73663 1.54302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440488 0.617443 0.933214 1.07379 1.22601

CAGE analysis