Hb_005488_160

Information

Type -
Description -
Location Contig5488: 122187-126049
Sequence    

Annotation

kegg
ID tcc:TCM_025637
description Root cap 1 isoform 1
nr
ID XP_012070276.1
description PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LF50
description Maltose excess protein 1, chloroplastic OS=Arabidopsis thaliana GN=MEX1 PE=2 SV=2
trembl
ID A0A067KX40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02583 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48129: 124914-125303 , PASA_asmbl_48130: 126294-127120
cDNA
(Sanger)
(ID:Location)		 048_K21r.ab1: 126381-127120

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_160 0.0 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
2 Hb_005563_040 0.0917862433 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
3 Hb_002411_100 0.1020736786 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
4 Hb_007694_060 0.1053195407 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
5 Hb_015175_040 0.1076660992 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010557_010 0.1087413713 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
7 Hb_000703_070 0.112466896 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
8 Hb_004459_060 0.1152255584 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
9 Hb_001047_180 0.1165880576 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000005_130 0.1170789283 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
11 Hb_027298_020 0.117814389 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
12 Hb_000442_070 0.119645223 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
13 Hb_000802_050 0.1199073188 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
14 Hb_001366_350 0.1235657538 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
15 Hb_000803_170 0.127536412 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
16 Hb_006620_070 0.1307538618 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
17 Hb_003948_020 0.1307971388 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
18 Hb_001300_130 0.1332789058 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
19 Hb_000089_140 0.1374929022 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
20 Hb_004117_150 0.138025559 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]

Gene co-expression network

sample Hb_005488_160 Hb_005488_160 Hb_005563_040 Hb_005563_040 Hb_005488_160--Hb_005563_040 Hb_002411_100 Hb_002411_100 Hb_005488_160--Hb_002411_100 Hb_007694_060 Hb_007694_060 Hb_005488_160--Hb_007694_060 Hb_015175_040 Hb_015175_040 Hb_005488_160--Hb_015175_040 Hb_010557_010 Hb_010557_010 Hb_005488_160--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_005488_160--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_005563_040--Hb_000803_170 Hb_005563_040--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_005563_040--Hb_000442_070 Hb_001579_280 Hb_001579_280 Hb_005563_040--Hb_001579_280 Hb_005563_040--Hb_010557_010 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_010557_010 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_007694_060--Hb_004459_060 Hb_000005_130 Hb_000005_130 Hb_007694_060--Hb_000005_130 Hb_006620_070 Hb_006620_070 Hb_007694_060--Hb_006620_070 Hb_023732_050 Hb_023732_050 Hb_007694_060--Hb_023732_050 Hb_001405_090 Hb_001405_090 Hb_007694_060--Hb_001405_090 Hb_006583_030 Hb_006583_030 Hb_015175_040--Hb_006583_030 Hb_015175_040--Hb_010557_010 Hb_015175_040--Hb_000442_070 Hb_015175_040--Hb_002411_100 Hb_000302_230 Hb_000302_230 Hb_015175_040--Hb_000302_230 Hb_002811_250 Hb_002811_250 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000703_070 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_027298_020 Hb_027298_020 Hb_000703_070--Hb_027298_020 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_000703_070--Hb_002811_250 Hb_002232_380 Hb_002232_380 Hb_000703_070--Hb_002232_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.391754 0.481757 9.40661 1.90681 0.429165 0.686055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.558944 1.16536 1.20222 0.543474 9.97409

CAGE analysis