Hb_005489_010

Information

Type -
Description -
Location Contig5489: 9507-10807
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11420g
description POPTRDRAFT_1094198; hypothetical protein
nr
ID XP_002316873.1
description hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
swissprot
ID P46417
description Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1
trembl
ID B9I1W4
description Tau class glutathione transferase GSTU28 OS=Populus trichocarpa GN=POPTR_0011s11420g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48148: 11684-14004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_010 0.0 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
2 Hb_002025_210 0.1563330539 - - -
3 Hb_002344_120 0.1659493464 - - -
4 Hb_000665_110 0.232575525 - - Ribosomal protein S11-beta [Theobroma cacao]
5 Hb_000562_060 0.2539146435 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
6 Hb_150766_020 0.2664000997 - - hypothetical protein VITISV_030841 [Vitis vinifera]
7 Hb_001233_020 0.2669752935 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
8 Hb_000994_110 0.2671982582 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001864_090 0.2687212841 - - -
10 Hb_001017_060 0.2749775958 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
11 Hb_080104_010 0.2786348964 - - unnamed protein product [Vitis vinifera]
12 Hb_011644_010 0.2868271578 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
13 Hb_002073_010 0.291066606 - - -
14 Hb_004669_030 0.2940670257 - - -
15 Hb_009346_040 0.2941199816 - - -
16 Hb_059978_010 0.2959473309 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_000157_080 0.2974327735 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
18 Hb_029142_070 0.3017189973 - - -
19 Hb_000281_160 0.3029679477 - - PREDICTED: cytochrome P450 716B2-like isoform X2 [Glycine max]
20 Hb_132180_010 0.3035390534 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]

Gene co-expression network

sample Hb_005489_010 Hb_005489_010 Hb_002025_210 Hb_002025_210 Hb_005489_010--Hb_002025_210 Hb_002344_120 Hb_002344_120 Hb_005489_010--Hb_002344_120 Hb_000665_110 Hb_000665_110 Hb_005489_010--Hb_000665_110 Hb_000562_060 Hb_000562_060 Hb_005489_010--Hb_000562_060 Hb_150766_020 Hb_150766_020 Hb_005489_010--Hb_150766_020 Hb_001233_020 Hb_001233_020 Hb_005489_010--Hb_001233_020 Hb_002025_210--Hb_002344_120 Hb_000994_110 Hb_000994_110 Hb_002025_210--Hb_000994_110 Hb_002025_210--Hb_000665_110 Hb_013492_010 Hb_013492_010 Hb_002025_210--Hb_013492_010 Hb_002025_210--Hb_150766_020 Hb_020035_010 Hb_020035_010 Hb_002344_120--Hb_020035_010 Hb_009346_040 Hb_009346_040 Hb_002344_120--Hb_009346_040 Hb_002344_120--Hb_000665_110 Hb_001017_060 Hb_001017_060 Hb_002344_120--Hb_001017_060 Hb_000665_110--Hb_000562_060 Hb_000181_380 Hb_000181_380 Hb_000665_110--Hb_000181_380 Hb_000665_110--Hb_001233_020 Hb_001220_010 Hb_001220_010 Hb_000665_110--Hb_001220_010 Hb_132180_010 Hb_132180_010 Hb_000562_060--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000562_060--Hb_000671_120 Hb_025288_010 Hb_025288_010 Hb_000562_060--Hb_025288_010 Hb_000562_060--Hb_001233_020 Hb_011037_020 Hb_011037_020 Hb_000562_060--Hb_011037_020 Hb_000562_060--Hb_001220_010 Hb_000157_080 Hb_000157_080 Hb_150766_020--Hb_000157_080 Hb_179812_010 Hb_179812_010 Hb_150766_020--Hb_179812_010 Hb_004195_230 Hb_004195_230 Hb_150766_020--Hb_004195_230 Hb_150766_020--Hb_000994_110 Hb_009393_190 Hb_009393_190 Hb_150766_020--Hb_009393_190 Hb_001233_020--Hb_001220_010 Hb_001233_020--Hb_132180_010 Hb_004669_030 Hb_004669_030 Hb_001233_020--Hb_004669_030 Hb_001233_020--Hb_000671_120 Hb_080601_020 Hb_080601_020 Hb_001233_020--Hb_080601_020 Hb_001233_020--Hb_000994_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.987702 0.204251 0.468541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.64968 0.637883 0 0.161097 0

CAGE analysis