Hb_005489_040

Information

Type -
Description -
Location Contig5489: 33677-45656
Sequence    

Annotation

kegg
ID cic:CICLE_v10019010mg
description hypothetical protein
nr
ID XP_012066561.1
description PREDICTED: cullin-1 [Jatropha curcas]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID A0A067LEP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24333 PE=3 SV=1
Gene Ontology
ID GO:0000794
description cullin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48154: 33584-36339 , PASA_asmbl_48155: 37240-45658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_040 0.0 - - PREDICTED: cullin-1 [Jatropha curcas]
2 Hb_000409_050 0.0481259661 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
3 Hb_073171_070 0.0599029558 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
4 Hb_005260_030 0.0609813762 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
5 Hb_003117_030 0.0625880569 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
6 Hb_007413_010 0.062944034 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
7 Hb_188281_040 0.0658712524 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
8 Hb_006189_020 0.0680189571 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_000773_040 0.0705735569 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
10 Hb_003280_020 0.0716266232 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
11 Hb_000009_030 0.0721487533 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
12 Hb_002411_110 0.0725205967 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
13 Hb_033312_040 0.0731504517 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
14 Hb_003777_290 0.0731551027 - - polypyrimidine tract binding protein, putative [Ricinus communis]
15 Hb_002749_060 0.0740556183 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
16 Hb_065500_020 0.0743837963 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
17 Hb_000270_170 0.0744916602 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
18 Hb_011537_060 0.074810643 - - UPF0061 protein azo1574 [Morus notabilis]
19 Hb_060980_010 0.0750753793 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_001348_080 0.0757218648 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005489_040 Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_005489_040--Hb_000409_050 Hb_073171_070 Hb_073171_070 Hb_005489_040--Hb_073171_070 Hb_005260_030 Hb_005260_030 Hb_005489_040--Hb_005260_030 Hb_003117_030 Hb_003117_030 Hb_005489_040--Hb_003117_030 Hb_007413_010 Hb_007413_010 Hb_005489_040--Hb_007413_010 Hb_188281_040 Hb_188281_040 Hb_005489_040--Hb_188281_040 Hb_006189_020 Hb_006189_020 Hb_000409_050--Hb_006189_020 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_027506_010 Hb_027506_010 Hb_000409_050--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_000409_050--Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_000409_050--Hb_060980_010 Hb_003040_050 Hb_003040_050 Hb_073171_070--Hb_003040_050 Hb_073171_070--Hb_000773_040 Hb_006663_060 Hb_006663_060 Hb_073171_070--Hb_006663_060 Hb_009288_020 Hb_009288_020 Hb_073171_070--Hb_009288_020 Hb_000270_190 Hb_000270_190 Hb_073171_070--Hb_000270_190 Hb_073171_070--Hb_007413_010 Hb_005260_030--Hb_007413_010 Hb_005260_030--Hb_073171_070 Hb_005260_030--Hb_003117_030 Hb_017469_110 Hb_017469_110 Hb_005260_030--Hb_017469_110 Hb_000270_170 Hb_000270_170 Hb_005260_030--Hb_000270_170 Hb_003117_030--Hb_007413_010 Hb_002581_010 Hb_002581_010 Hb_003117_030--Hb_002581_010 Hb_003117_030--Hb_188281_040 Hb_001789_110 Hb_001789_110 Hb_003117_030--Hb_001789_110 Hb_001925_060 Hb_001925_060 Hb_003117_030--Hb_001925_060 Hb_006913_020 Hb_006913_020 Hb_007413_010--Hb_006913_020 Hb_008948_020 Hb_008948_020 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_007413_010--Hb_001925_060 Hb_007413_010--Hb_001789_110 Hb_188281_040--Hb_001789_110 Hb_000406_200 Hb_000406_200 Hb_188281_040--Hb_000406_200 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25096 8.20383 10.5694 9.05101 6.08651 6.74394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.39752 5.87784 5.7967 12.846 13.9913

CAGE analysis