Hb_005489_080

Information

Type -
Description -
Location Contig5489: 61287-64706
Sequence    

Annotation

kegg
ID rcu:RCOM_1680650
description hypothetical protein
nr
ID XP_002509615.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RBT1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1680650 PE=4 SV=1
Gene Ontology
ID GO:0005886
description glycine-rich isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48160: 61290-64671 , PASA_asmbl_48161: 63770-64128
cDNA
(Sanger)
(ID:Location)		 002_O13.ab1: 61350-62846 , 005_J02.ab1: 61285-63033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_031527_020 0.041797449 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
3 Hb_000732_120 0.059136436 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
4 Hb_004128_050 0.0626722918 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
5 Hb_003785_040 0.067357147 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
6 Hb_111198_010 0.0684600651 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
7 Hb_002025_110 0.0694333188 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
8 Hb_004970_090 0.0697806084 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
9 Hb_000261_220 0.0707323556 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
10 Hb_002686_250 0.0736377494 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
11 Hb_008511_030 0.0746175766 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
12 Hb_017491_030 0.0765800205 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
13 Hb_033720_010 0.0787571898 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
14 Hb_000116_060 0.0789848447 - - plant ubiquilin, putative [Ricinus communis]
15 Hb_002835_230 0.079700009 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_000656_250 0.0810780543 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
17 Hb_000032_490 0.0817138238 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
18 Hb_002078_110 0.0820561637 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
19 Hb_003029_030 0.0824202608 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
20 Hb_002351_020 0.0835242767 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005489_080 Hb_005489_080 Hb_031527_020 Hb_031527_020 Hb_005489_080--Hb_031527_020 Hb_000732_120 Hb_000732_120 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_003785_040 Hb_003785_040 Hb_005489_080--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_031527_020--Hb_003785_040 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_000959_270 Hb_000959_270 Hb_000732_120--Hb_000959_270 Hb_000832_090 Hb_000832_090 Hb_000732_120--Hb_000832_090 Hb_000732_120--Hb_111198_010 Hb_004970_090 Hb_004970_090 Hb_000732_120--Hb_004970_090 Hb_006252_020 Hb_006252_020 Hb_004128_050--Hb_006252_020 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_000261_220 Hb_000261_220 Hb_002025_110--Hb_000261_220 Hb_002025_110--Hb_111198_010 Hb_033095_020 Hb_033095_020 Hb_002025_110--Hb_033095_020 Hb_000140_080 Hb_000140_080 Hb_002025_110--Hb_000140_080 Hb_002025_110--Hb_031527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
187.62 233.649 117.008 113.447 246.202 207.352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.707 146.171 113.877 84.1801 91.8954

CAGE analysis