Hb_005489_090

Information

Type -
Description -
Location Contig5489: 72974-80883
Sequence    

Annotation

kegg
ID rcu:RCOM_1680630
description immature colon carcinoma transcript, putative
nr
ID XP_012087097.1
description PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
swissprot
ID Q8R035
description Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Mus musculus GN=Ict1 PE=1 SV=1
trembl
ID A0A067K023
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20751 PE=4 SV=1
Gene Ontology
ID GO:0003747
description peptidyl-trna hydrolase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48162: 72801-80446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_090 0.0 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
2 Hb_001124_180 0.0634350216 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
3 Hb_003935_080 0.0694102082 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
4 Hb_000594_100 0.0835081643 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
5 Hb_010577_040 0.0878565337 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
6 Hb_005725_220 0.0956510263 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
7 Hb_001792_030 0.0994458925 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
8 Hb_000983_070 0.1003682315 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000042_290 0.1028295284 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
10 Hb_000152_480 0.1035242192 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
11 Hb_000175_050 0.1086761452 - - -
12 Hb_001711_120 0.1087509428 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
13 Hb_000627_300 0.112067906 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
14 Hb_020378_060 0.1161149005 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
15 Hb_000388_060 0.1169215786 - - fructokinase [Manihot esculenta]
16 Hb_010128_020 0.1172949035 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
17 Hb_001789_200 0.1179577271 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
18 Hb_001373_130 0.1192284603 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002053_010 0.119273283 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
20 Hb_001629_090 0.1223883444 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005489_090 Hb_005489_090 Hb_001124_180 Hb_001124_180 Hb_005489_090--Hb_001124_180 Hb_003935_080 Hb_003935_080 Hb_005489_090--Hb_003935_080 Hb_000594_100 Hb_000594_100 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_001124_180--Hb_003935_080 Hb_001124_180--Hb_005725_220 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_001124_180--Hb_000594_100 Hb_000176_010 Hb_000176_010 Hb_001124_180--Hb_000176_010 Hb_003935_080--Hb_000594_100 Hb_003935_080--Hb_010577_040 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050 Hb_001373_130 Hb_001373_130 Hb_000594_100--Hb_001373_130 Hb_000594_100--Hb_010577_040 Hb_000983_070 Hb_000983_070 Hb_000594_100--Hb_000983_070 Hb_000723_290 Hb_000723_290 Hb_010577_040--Hb_000723_290 Hb_001621_060 Hb_001621_060 Hb_010577_040--Hb_001621_060 Hb_020378_060 Hb_020378_060 Hb_010577_040--Hb_020378_060 Hb_000164_140 Hb_000164_140 Hb_005725_220--Hb_000164_140 Hb_005846_030 Hb_005846_030 Hb_005725_220--Hb_005846_030 Hb_002078_300 Hb_002078_300 Hb_005725_220--Hb_002078_300 Hb_029920_030 Hb_029920_030 Hb_005725_220--Hb_029920_030 Hb_000189_520 Hb_000189_520 Hb_001792_030--Hb_000189_520 Hb_001792_030--Hb_001621_060 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_001792_030--Hb_000594_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69431 2.92765 17.0465 9.60744 1.3403 2.5409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.05463 11.7223 7.33517 5.04626 32.0939

CAGE analysis