Hb_005489_110

Information

Type -
Description -
Location Contig5489: 86690-89731
Sequence    

Annotation

kegg
ID rcu:RCOM_1680510
description aminomethyltransferase, putative
nr
ID XP_012087099.1
description PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
swissprot
ID B8JMH0
description Putative transferase CAF17 homolog, mitochondrial OS=Danio rerio GN=iba57 PE=3 SV=1
trembl
ID A0A067JNX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20753 PE=3 SV=1
Gene Ontology
ID GO:0005759
description transferase caf17 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48168: 86778-89617
cDNA
(Sanger)
(ID:Location)		 041_D19.ab1: 88276-88939

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_110 0.0 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
2 Hb_003195_070 0.0823218756 - - Uncharacterized protein isoform 1 [Theobroma cacao]
3 Hb_007426_030 0.0846989746 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
4 Hb_001623_510 0.0853671298 - - transporter, putative [Ricinus communis]
5 Hb_004109_090 0.0867762639 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_009048_040 0.0867871847 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
7 Hb_001975_140 0.0889331842 - - PREDICTED: urease accessory protein F [Jatropha curcas]
8 Hb_001675_180 0.0895981471 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
9 Hb_000796_220 0.0903011893 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
10 Hb_001019_060 0.0914389799 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
11 Hb_000169_090 0.0923641444 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
12 Hb_000261_350 0.0948416618 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
13 Hb_000832_020 0.0950293856 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
14 Hb_003195_060 0.0955308024 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
15 Hb_001266_080 0.0968188529 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
16 Hb_000898_040 0.0970733641 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000103_180 0.0972559052 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
18 Hb_001344_010 0.0993150409 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
19 Hb_002685_210 0.1013969549 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
20 Hb_024714_100 0.1016275951 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005489_110 Hb_005489_110 Hb_003195_070 Hb_003195_070 Hb_005489_110--Hb_003195_070 Hb_007426_030 Hb_007426_030 Hb_005489_110--Hb_007426_030 Hb_001623_510 Hb_001623_510 Hb_005489_110--Hb_001623_510 Hb_004109_090 Hb_004109_090 Hb_005489_110--Hb_004109_090 Hb_009048_040 Hb_009048_040 Hb_005489_110--Hb_009048_040 Hb_001975_140 Hb_001975_140 Hb_005489_110--Hb_001975_140 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_000010_330 Hb_000010_330 Hb_003195_070--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_003195_070--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_003195_070--Hb_048937_040 Hb_003195_070--Hb_004109_090 Hb_002200_080 Hb_002200_080 Hb_003195_070--Hb_002200_080 Hb_000103_180 Hb_000103_180 Hb_007426_030--Hb_000103_180 Hb_001019_060 Hb_001019_060 Hb_007426_030--Hb_001019_060 Hb_000808_230 Hb_000808_230 Hb_007426_030--Hb_000808_230 Hb_000483_200 Hb_000483_200 Hb_007426_030--Hb_000483_200 Hb_002079_010 Hb_002079_010 Hb_007426_030--Hb_002079_010 Hb_006400_060 Hb_006400_060 Hb_007426_030--Hb_006400_060 Hb_000014_150 Hb_000014_150 Hb_001623_510--Hb_000014_150 Hb_001623_510--Hb_001019_060 Hb_001623_510--Hb_007426_030 Hb_001266_080 Hb_001266_080 Hb_001623_510--Hb_001266_080 Hb_034271_030 Hb_034271_030 Hb_001623_510--Hb_034271_030 Hb_003175_010 Hb_003175_010 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_004724_200 Hb_004724_200 Hb_004109_090--Hb_004724_200 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_005663_060 Hb_005663_060 Hb_004109_090--Hb_005663_060 Hb_005754_060 Hb_005754_060 Hb_009048_040--Hb_005754_060 Hb_009048_040--Hb_004109_090 Hb_009048_040--Hb_003195_070 Hb_000080_190 Hb_000080_190 Hb_009048_040--Hb_000080_190 Hb_009048_040--Hb_002506_020 Hb_132835_010 Hb_132835_010 Hb_001975_140--Hb_132835_010 Hb_000173_290 Hb_000173_290 Hb_001975_140--Hb_000173_290 Hb_005194_010 Hb_005194_010 Hb_001975_140--Hb_005194_010 Hb_000342_130 Hb_000342_130 Hb_001975_140--Hb_000342_130 Hb_009658_020 Hb_009658_020 Hb_001975_140--Hb_009658_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9618 5.9658 7.29696 15.2308 27.7654 34.1064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8494 20.9249 31.569 13.5173 17.6973

CAGE analysis