Hb_005489_120

Information

Type -
Description -
Location Contig5489: 90889-94074
Sequence    

Annotation

kegg
ID rcu:RCOM_1680260
description leucine rich repeat receptor kinase, putative (EC:1.3.1.74)
nr
ID XP_002509606.1
description leucine rich repeat receptor kinase, putative [Ricinus communis]
swissprot
ID Q8RY65
description Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1
trembl
ID B9RBS2
description Leucine rich repeat receptor kinase, putative OS=Ricinus communis GN=RCOM_1680260 PE=4 SV=1
Gene Ontology
ID GO:0005886
description leucine-rich repeat transmembrane protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48169: 90606-90908 , PASA_asmbl_48170: 91027-93383 , PASA_asmbl_48171: 93477-93905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_120 0.0 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
2 Hb_000300_170 0.0801350012 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
3 Hb_001053_110 0.0923687648 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
4 Hb_000676_170 0.1068211654 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
5 Hb_001856_160 0.1089198993 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012787_050 0.1164353069 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
7 Hb_000022_280 0.1175613348 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
8 Hb_001799_090 0.1200805644 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
9 Hb_029866_080 0.1216958385 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
10 Hb_023956_010 0.1229472185 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_000963_010 0.1231529809 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
12 Hb_000479_230 0.1245505003 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
13 Hb_005333_120 0.127357624 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
14 Hb_003847_050 0.1277237217 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
15 Hb_003266_060 0.1284353837 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
16 Hb_011129_020 0.1298767312 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
17 Hb_000417_350 0.1317478074 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001369_620 0.1323214617 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
19 Hb_002333_010 0.136313573 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
20 Hb_000069_520 0.1372994508 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]

Gene co-expression network

sample Hb_005489_120 Hb_005489_120 Hb_000300_170 Hb_000300_170 Hb_005489_120--Hb_000300_170 Hb_001053_110 Hb_001053_110 Hb_005489_120--Hb_001053_110 Hb_000676_170 Hb_000676_170 Hb_005489_120--Hb_000676_170 Hb_001856_160 Hb_001856_160 Hb_005489_120--Hb_001856_160 Hb_012787_050 Hb_012787_050 Hb_005489_120--Hb_012787_050 Hb_000022_280 Hb_000022_280 Hb_005489_120--Hb_000022_280 Hb_000300_170--Hb_000022_280 Hb_000300_170--Hb_001053_110 Hb_004129_110 Hb_004129_110 Hb_000300_170--Hb_004129_110 Hb_007313_010 Hb_007313_010 Hb_000300_170--Hb_007313_010 Hb_000300_170--Hb_001856_160 Hb_129637_010 Hb_129637_010 Hb_001053_110--Hb_129637_010 Hb_000417_350 Hb_000417_350 Hb_001053_110--Hb_000417_350 Hb_005333_120 Hb_005333_120 Hb_001053_110--Hb_005333_120 Hb_001369_620 Hb_001369_620 Hb_001053_110--Hb_001369_620 Hb_002374_060 Hb_002374_060 Hb_000676_170--Hb_002374_060 Hb_000479_230 Hb_000479_230 Hb_000676_170--Hb_000479_230 Hb_000069_520 Hb_000069_520 Hb_000676_170--Hb_000069_520 Hb_003964_060 Hb_003964_060 Hb_000676_170--Hb_003964_060 Hb_003266_060 Hb_003266_060 Hb_000676_170--Hb_003266_060 Hb_001799_090 Hb_001799_090 Hb_001856_160--Hb_001799_090 Hb_006153_130 Hb_006153_130 Hb_001856_160--Hb_006153_130 Hb_003376_300 Hb_003376_300 Hb_001856_160--Hb_003376_300 Hb_002289_110 Hb_002289_110 Hb_001856_160--Hb_002289_110 Hb_000454_200 Hb_000454_200 Hb_001856_160--Hb_000454_200 Hb_006846_030 Hb_006846_030 Hb_012787_050--Hb_006846_030 Hb_000070_070 Hb_000070_070 Hb_012787_050--Hb_000070_070 Hb_023956_010 Hb_023956_010 Hb_012787_050--Hb_023956_010 Hb_002333_010 Hb_002333_010 Hb_012787_050--Hb_002333_010 Hb_003847_050 Hb_003847_050 Hb_012787_050--Hb_003847_050 Hb_008727_040 Hb_008727_040 Hb_012787_050--Hb_008727_040 Hb_000022_280--Hb_004129_110 Hb_010174_170 Hb_010174_170 Hb_000022_280--Hb_010174_170 Hb_166009_010 Hb_166009_010 Hb_000022_280--Hb_166009_010 Hb_000009_130 Hb_000009_130 Hb_000022_280--Hb_000009_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0399496 2.44456 1.84883 5.72858 0.0509598 0.0358001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0173077 0 0.0779206 6.60798 0.810927

CAGE analysis