Hb_005490_030

Information

Type transcription factor
Description TF Family: FAR1
Location Contig5490: 51878-54149
Sequence    

Annotation

kegg
ID tcc:TCM_002031
description FAR1-related sequence 2, putative isoform 5
nr
ID XP_012066433.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
swissprot
ID Q3EBQ3
description Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=1 SV=1
trembl
ID A0A067LE68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00489 PE=4 SV=1
Gene Ontology
ID GO:0008270
description frs transcription factor isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48181: 50331-51963 , PASA_asmbl_48182: 51364-51801 , PASA_asmbl_48183: 52046-52278 , PASA_asmbl_48184: 52474-52639 , PASA_asmbl_48186: 53295-54472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005490_030 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
2 Hb_001009_170 0.0546332092 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_001344_010 0.0565968093 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
4 Hb_023001_060 0.0693233262 - - PREDICTED: importin-11 [Jatropha curcas]
5 Hb_000172_290 0.0707008283 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
6 Hb_000749_220 0.070858112 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
7 Hb_005054_100 0.0721311979 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
8 Hb_000976_410 0.0736984031 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
9 Hb_002740_180 0.0744583499 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004920_120 0.0759550671 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002685_210 0.0766883175 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
12 Hb_004607_050 0.0772372545 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_000185_040 0.0806012048 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
14 Hb_002217_300 0.083900319 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
15 Hb_003177_030 0.0843717515 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
16 Hb_000999_050 0.0853926498 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
17 Hb_004218_110 0.0863937066 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
18 Hb_000318_290 0.08729326 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
19 Hb_003206_070 0.0879354974 - - organic anion transporter, putative [Ricinus communis]
20 Hb_003777_310 0.0888360784 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005490_030 Hb_005490_030 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_001344_010 Hb_001344_010 Hb_005490_030--Hb_001344_010 Hb_023001_060 Hb_023001_060 Hb_005490_030--Hb_023001_060 Hb_000172_290 Hb_000172_290 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005054_100 Hb_005054_100 Hb_005490_030--Hb_005054_100 Hb_004920_120 Hb_004920_120 Hb_001009_170--Hb_004920_120 Hb_001959_210 Hb_001959_210 Hb_001009_170--Hb_001959_210 Hb_011671_180 Hb_011671_180 Hb_001009_170--Hb_011671_180 Hb_001619_070 Hb_001619_070 Hb_001009_170--Hb_001619_070 Hb_007044_140 Hb_007044_140 Hb_001009_170--Hb_007044_140 Hb_001344_010--Hb_023001_060 Hb_001344_010--Hb_005054_100 Hb_000169_090 Hb_000169_090 Hb_001344_010--Hb_000169_090 Hb_000700_110 Hb_000700_110 Hb_001344_010--Hb_000700_110 Hb_003777_310 Hb_003777_310 Hb_001344_010--Hb_003777_310 Hb_023001_060--Hb_003777_310 Hb_023001_060--Hb_005054_100 Hb_003697_030 Hb_003697_030 Hb_023001_060--Hb_003697_030 Hb_000318_290 Hb_000318_290 Hb_023001_060--Hb_000318_290 Hb_054865_150 Hb_054865_150 Hb_000172_290--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210 Hb_006478_020 Hb_006478_020 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010 Hb_003177_030 Hb_003177_030 Hb_000749_220--Hb_003177_030 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_001159_130 Hb_001159_130 Hb_000749_220--Hb_001159_130 Hb_002811_060 Hb_002811_060 Hb_005054_100--Hb_002811_060 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_012022_090 Hb_012022_090 Hb_005054_100--Hb_012022_090 Hb_005054_100--Hb_000169_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28527 3.17752 2.64298 7.64508 6.92311 10.0738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.52137 7.28255 11.9217 8.00247 5.91381

CAGE analysis