Hb_005493_010

Information

Type -
Description -
Location Contig5493: 38614-42903
Sequence    

Annotation

kegg
ID tcc:TCM_043329
description Pectin lyase-like superfamily protein isoform 1
nr
ID XP_007010024.1
description Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID Q93Z04
description Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1
trembl
ID A0A061FND9
description Pectate lyase OS=Theobroma cacao GN=TCM_043329 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectin lyase-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48189: 40763-42900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005493_010 0.0 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
2 Hb_002817_050 0.1128335514 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
3 Hb_030827_010 0.1176724917 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
4 Hb_001278_090 0.1223339111 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
5 Hb_002949_020 0.1285078126 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
6 Hb_002235_110 0.1318595591 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_074197_030 0.1327722841 - - unnamed protein product [Vitis vinifera]
8 Hb_003145_010 0.1337612148 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
9 Hb_000054_030 0.1353005844 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
10 Hb_003915_020 0.139152598 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
11 Hb_005183_040 0.1405079295 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
12 Hb_004374_160 0.1407001186 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
13 Hb_003141_060 0.1433710939 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
14 Hb_002716_110 0.1438912887 - - PREDICTED: interaptin [Jatropha curcas]
15 Hb_069696_020 0.1442666694 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
16 Hb_003177_050 0.1485346477 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
17 Hb_002397_050 0.1493099111 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
18 Hb_012132_020 0.1500611648 - - glutamine synthetase [Hevea brasiliensis]
19 Hb_000318_010 0.150375923 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
20 Hb_000901_010 0.150461681 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]

Gene co-expression network

sample Hb_005493_010 Hb_005493_010 Hb_002817_050 Hb_002817_050 Hb_005493_010--Hb_002817_050 Hb_030827_010 Hb_030827_010 Hb_005493_010--Hb_030827_010 Hb_001278_090 Hb_001278_090 Hb_005493_010--Hb_001278_090 Hb_002949_020 Hb_002949_020 Hb_005493_010--Hb_002949_020 Hb_002235_110 Hb_002235_110 Hb_005493_010--Hb_002235_110 Hb_074197_030 Hb_074197_030 Hb_005493_010--Hb_074197_030 Hb_000901_010 Hb_000901_010 Hb_002817_050--Hb_000901_010 Hb_000181_220 Hb_000181_220 Hb_002817_050--Hb_000181_220 Hb_004374_160 Hb_004374_160 Hb_002817_050--Hb_004374_160 Hb_010557_020 Hb_010557_020 Hb_002817_050--Hb_010557_020 Hb_000162_200 Hb_000162_200 Hb_002817_050--Hb_000162_200 Hb_003145_010 Hb_003145_010 Hb_030827_010--Hb_003145_010 Hb_069696_020 Hb_069696_020 Hb_030827_010--Hb_069696_020 Hb_000627_050 Hb_000627_050 Hb_030827_010--Hb_000627_050 Hb_016924_010 Hb_016924_010 Hb_030827_010--Hb_016924_010 Hb_000703_120 Hb_000703_120 Hb_030827_010--Hb_000703_120 Hb_030827_010--Hb_001278_090 Hb_001278_090--Hb_000181_220 Hb_000140_500 Hb_000140_500 Hb_001278_090--Hb_000140_500 Hb_000416_090 Hb_000416_090 Hb_001278_090--Hb_000416_090 Hb_001278_090--Hb_002949_020 Hb_000130_480 Hb_000130_480 Hb_001278_090--Hb_000130_480 Hb_004032_110 Hb_004032_110 Hb_002949_020--Hb_004032_110 Hb_002949_020--Hb_002235_110 Hb_000054_030 Hb_000054_030 Hb_002949_020--Hb_000054_030 Hb_006370_050 Hb_006370_050 Hb_002949_020--Hb_006370_050 Hb_002949_020--Hb_074197_030 Hb_000612_090 Hb_000612_090 Hb_002235_110--Hb_000612_090 Hb_002235_110--Hb_074197_030 Hb_002235_110--Hb_000054_030 Hb_005276_070 Hb_005276_070 Hb_002235_110--Hb_005276_070 Hb_000805_010 Hb_000805_010 Hb_002235_110--Hb_000805_010 Hb_000352_280 Hb_000352_280 Hb_074197_030--Hb_000352_280 Hb_074197_030--Hb_000612_090 Hb_015141_010 Hb_015141_010 Hb_074197_030--Hb_015141_010 Hb_172426_060 Hb_172426_060 Hb_074197_030--Hb_172426_060 Hb_008725_090 Hb_008725_090 Hb_074197_030--Hb_008725_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129408 1.00589 3.84096 3.34883 0.0665999 0.0187698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0222111 0.576722 0.0663071 1.64761 5.80108

CAGE analysis