Hb_005494_010

Information

Type -
Description -
Location Contig5494: 11768-15592
Sequence    

Annotation

kegg
ID rcu:RCOM_1419520
description catalytic, putative
nr
ID XP_002525806.1
description catalytic, putative [Ricinus communis]
swissprot
ID P50201
description Agropine synthesis reductase OS=Agrobacterium rhizogenes GN=mas1 PE=3 SV=1
trembl
ID B9SII7
description Catalytic, putative OS=Ricinus communis GN=RCOM_1419520 PE=4 SV=1
Gene Ontology
ID GO:0005829
description metal-independent phosphoserine phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48192: 11925-15288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005494_010 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_113853_010 0.0727137711 - - 50S ribosomal protein L2, putative [Ricinus communis]
3 Hb_001623_270 0.0768899434 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
4 Hb_005946_040 0.0789724742 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
5 Hb_000304_070 0.0792062825 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
6 Hb_001109_050 0.079917962 - - PREDICTED: ankyrin-1 [Jatropha curcas]
7 Hb_000227_170 0.0806380456 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_002759_190 0.0810182031 - - PREDICTED: protein NLRC3 [Jatropha curcas]
9 Hb_001541_050 0.0851103295 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
10 Hb_065525_080 0.0861143905 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
11 Hb_001935_100 0.0870294832 - - structural molecule, putative [Ricinus communis]
12 Hb_093666_010 0.0871708232 - - BnaC05g06620D [Brassica napus]
13 Hb_000537_100 0.0942505361 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_107879_010 0.0945481498 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_002876_300 0.0953230098 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
16 Hb_000221_140 0.0997644066 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
17 Hb_010863_050 0.1000147366 - - OTU domain-containing protein 6B, putative [Ricinus communis]
18 Hb_014497_100 0.1004975826 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
19 Hb_000176_020 0.102441794 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
20 Hb_021374_030 0.1025334594 - - hypothetical protein RCOM_0351490 [Ricinus communis]

Gene co-expression network

sample Hb_005494_010 Hb_005494_010 Hb_113853_010 Hb_113853_010 Hb_005494_010--Hb_113853_010 Hb_001623_270 Hb_001623_270 Hb_005494_010--Hb_001623_270 Hb_005946_040 Hb_005946_040 Hb_005494_010--Hb_005946_040 Hb_000304_070 Hb_000304_070 Hb_005494_010--Hb_000304_070 Hb_001109_050 Hb_001109_050 Hb_005494_010--Hb_001109_050 Hb_000227_170 Hb_000227_170 Hb_005494_010--Hb_000227_170 Hb_065525_080 Hb_065525_080 Hb_113853_010--Hb_065525_080 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_093666_010 Hb_093666_010 Hb_113853_010--Hb_093666_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_021374_030 Hb_021374_030 Hb_113853_010--Hb_021374_030 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_183433_010 Hb_183433_010 Hb_001623_270--Hb_183433_010 Hb_000789_320 Hb_000789_320 Hb_001623_270--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_000537_100 Hb_000537_100 Hb_005946_040--Hb_000537_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_005946_040--Hb_002876_300 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_002631_240 Hb_002631_240 Hb_005946_040--Hb_002631_240 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090 Hb_010863_050 Hb_010863_050 Hb_000304_070--Hb_010863_050 Hb_000304_070--Hb_001623_270 Hb_001824_080 Hb_001824_080 Hb_000304_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000304_070--Hb_005588_080 Hb_000254_100 Hb_000254_100 Hb_000304_070--Hb_000254_100 Hb_000207_300 Hb_000207_300 Hb_000304_070--Hb_000207_300 Hb_000221_140 Hb_000221_140 Hb_001109_050--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001109_050--Hb_033312_010 Hb_012150_030 Hb_012150_030 Hb_001109_050--Hb_012150_030 Hb_134849_010 Hb_134849_010 Hb_001109_050--Hb_134849_010 Hb_005127_030 Hb_005127_030 Hb_001109_050--Hb_005127_030 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_001935_100 Hb_001935_100 Hb_000227_170--Hb_001935_100 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000227_170--Hb_000304_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.43772 7.36206 20.4124 8.93689 7.04471 6.238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.089 13.2382 4.44879 8.81145 17.0686

CAGE analysis