Hb_005496_040

Information

Type -
Description -
Location Contig5496: 38722-41237
Sequence    

Annotation

kegg
ID rcu:RCOM_1587650
description hypothetical protein
nr
ID XP_012068240.1
description PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16044 PE=3 SV=1
Gene Ontology
ID GO:0015935
description glycosyl hydrolase family 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48205: 38350-38567 , PASA_asmbl_48206: 38836-41209 , PASA_asmbl_48207: 40068-40365 , PASA_asmbl_48208: 40395-41140
cDNA
(Sanger)
(ID:Location)		 045_A11.ab1: 38863-41203

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_040 0.0 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
2 Hb_000342_040 0.076730076 - - pollen specific protein sf21, putative [Ricinus communis]
3 Hb_003750_120 0.0800130365 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
4 Hb_008686_010 0.081963781 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000032_420 0.0832574876 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
6 Hb_004117_090 0.0847737266 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
7 Hb_000003_750 0.0848872204 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
8 Hb_002045_210 0.0851739467 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
9 Hb_001544_090 0.093567565 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_000022_080 0.0945046694 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
11 Hb_005890_020 0.0951391583 - - putative plant disease resistance family protein [Populus trichocarpa]
12 Hb_000441_130 0.0983722073 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
13 Hb_005976_110 0.0989881417 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
14 Hb_000321_170 0.099233212 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
15 Hb_001186_100 0.1001669295 - - PREDICTED: uncharacterized protein LOC105640806 isoform X1 [Jatropha curcas]
16 Hb_004223_060 0.1061599215 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
17 Hb_000878_050 0.1077049369 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
18 Hb_017383_010 0.1091869848 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]
19 Hb_001007_020 0.1092168166 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
20 Hb_001080_190 0.1099830738 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005496_040 Hb_005496_040 Hb_000342_040 Hb_000342_040 Hb_005496_040--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_000032_420 Hb_000032_420 Hb_005496_040--Hb_000032_420 Hb_004117_090 Hb_004117_090 Hb_005496_040--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750 Hb_002045_210 Hb_002045_210 Hb_000342_040--Hb_002045_210 Hb_000342_040--Hb_004117_090 Hb_000441_130 Hb_000441_130 Hb_000342_040--Hb_000441_130 Hb_000342_040--Hb_000032_420 Hb_001544_090 Hb_001544_090 Hb_000342_040--Hb_001544_090 Hb_003750_120--Hb_000003_750 Hb_001159_090 Hb_001159_090 Hb_003750_120--Hb_001159_090 Hb_001007_020 Hb_001007_020 Hb_003750_120--Hb_001007_020 Hb_003750_120--Hb_002045_210 Hb_000418_110 Hb_000418_110 Hb_003750_120--Hb_000418_110 Hb_169893_010 Hb_169893_010 Hb_008686_010--Hb_169893_010 Hb_001195_550 Hb_001195_550 Hb_008686_010--Hb_001195_550 Hb_070498_010 Hb_070498_010 Hb_008686_010--Hb_070498_010 Hb_008686_010--Hb_000003_750 Hb_143629_120 Hb_143629_120 Hb_008686_010--Hb_143629_120 Hb_010449_010 Hb_010449_010 Hb_000032_420--Hb_010449_010 Hb_017383_010 Hb_017383_010 Hb_000032_420--Hb_017383_010 Hb_000032_420--Hb_001544_090 Hb_000996_070 Hb_000996_070 Hb_000032_420--Hb_000996_070 Hb_015048_020 Hb_015048_020 Hb_000032_420--Hb_015048_020 Hb_000032_420--Hb_000441_130 Hb_004117_090--Hb_001544_090 Hb_005976_110 Hb_005976_110 Hb_004117_090--Hb_005976_110 Hb_000190_170 Hb_000190_170 Hb_004117_090--Hb_000190_170 Hb_004117_090--Hb_000032_420 Hb_011918_070 Hb_011918_070 Hb_000003_750--Hb_011918_070 Hb_001157_050 Hb_001157_050 Hb_000003_750--Hb_001157_050 Hb_000003_750--Hb_070498_010 Hb_000003_750--Hb_015048_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.654989 4.00103 36.2824 42.4374 0.436794 0.407898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148793 0.35095 0.315182 1.92283 15.4967

CAGE analysis