Hb_005496_070

Information

Type transcription factor
Description TF Family: C2H2
Location Contig5496: 68013-68756
Sequence    

Annotation

kegg
ID rcu:RCOM_1587620
description zinc finger protein, putative
nr
ID XP_012068237.1
description PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
swissprot
ID Q96289
description Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1
trembl
ID A0A067LC07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16041 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein zat10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48212: 67804-68970
cDNA
(Sanger)
(ID:Location)		 020_O23.ab1: 68050-68860 , 026_A04.ab1: 68436-68860 , 027_M08.ab1: 68129-68860 , 028_A23.ab1: 68158-68860 , 050_O18.ab1: 68110-68860

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_070 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
2 Hb_005976_040 0.1413597362 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
3 Hb_006043_020 0.1543362788 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
4 Hb_000139_100 0.1745337775 - - PREDICTED: sugar transport protein 13-like [Jatropha curcas]
5 Hb_000345_500 0.1786101119 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
6 Hb_018563_020 0.1867107036 transcription factor TF Family: ERF ethylene-responsive transcription factor 6 [Hevea brasiliensis]
7 Hb_002053_030 0.197284775 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_003023_080 0.1985454149 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
9 Hb_001511_190 0.2011498605 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
10 Hb_000836_160 0.2096304652 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
11 Hb_000152_860 0.2132375819 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_032920_040 0.2158333237 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
13 Hb_156850_080 0.216291886 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
14 Hb_006538_030 0.2235368423 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
15 Hb_019026_030 0.226620883 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
16 Hb_125884_010 0.2267014964 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
17 Hb_000417_420 0.2270338754 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
18 Hb_000805_150 0.2291905056 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
19 Hb_000776_050 0.2309691438 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
20 Hb_000532_030 0.2311136073 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005496_070 Hb_005496_070 Hb_005976_040 Hb_005976_040 Hb_005496_070--Hb_005976_040 Hb_006043_020 Hb_006043_020 Hb_005496_070--Hb_006043_020 Hb_000139_100 Hb_000139_100 Hb_005496_070--Hb_000139_100 Hb_000345_500 Hb_000345_500 Hb_005496_070--Hb_000345_500 Hb_018563_020 Hb_018563_020 Hb_005496_070--Hb_018563_020 Hb_002053_030 Hb_002053_030 Hb_005496_070--Hb_002053_030 Hb_005976_040--Hb_006043_020 Hb_005976_040--Hb_018563_020 Hb_005976_040--Hb_002053_030 Hb_000260_300 Hb_000260_300 Hb_005976_040--Hb_000260_300 Hb_000836_160 Hb_000836_160 Hb_005976_040--Hb_000836_160 Hb_006043_020--Hb_002053_030 Hb_006043_020--Hb_000260_300 Hb_006043_020--Hb_000345_500 Hb_006043_020--Hb_018563_020 Hb_006538_030 Hb_006538_030 Hb_006043_020--Hb_006538_030 Hb_000152_860 Hb_000152_860 Hb_000139_100--Hb_000152_860 Hb_000672_150 Hb_000672_150 Hb_000139_100--Hb_000672_150 Hb_001511_250 Hb_001511_250 Hb_000139_100--Hb_001511_250 Hb_000813_160 Hb_000813_160 Hb_000139_100--Hb_000813_160 Hb_001472_130 Hb_001472_130 Hb_000139_100--Hb_001472_130 Hb_000345_500--Hb_002053_030 Hb_000776_050 Hb_000776_050 Hb_000345_500--Hb_000776_050 Hb_000345_500--Hb_006538_030 Hb_000069_330 Hb_000069_330 Hb_000345_500--Hb_000069_330 Hb_001863_270 Hb_001863_270 Hb_000345_500--Hb_001863_270 Hb_018563_020--Hb_000260_300 Hb_000086_610 Hb_000086_610 Hb_018563_020--Hb_000086_610 Hb_018563_020--Hb_000836_160 Hb_018563_020--Hb_006538_030 Hb_002053_030--Hb_000776_050 Hb_032920_040 Hb_032920_040 Hb_002053_030--Hb_032920_040 Hb_000373_250 Hb_000373_250 Hb_002053_030--Hb_000373_250 Hb_002053_030--Hb_001863_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29723 474.433 125.665 171.567 2.74859 2.6673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.4542 129.266 42.9698 5.31745 41.7129

CAGE analysis