Hb_005496_100

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5496: 84306-85698
Sequence    

Annotation

kegg
ID rcu:RCOM_1587600
description transcription factor, putative
nr
ID XP_010999863.1
description PREDICTED: transcription factor bHLH85-like [Populus euphratica]
swissprot
ID Q84WK0
description Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1
trembl
ID A0A067KZM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16039 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh85-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_100 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
2 Hb_003020_290 0.2165213489 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
3 Hb_158235_010 0.2227104176 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
4 Hb_001519_020 0.2258017515 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
5 Hb_008191_010 0.2387443412 - - -
6 Hb_161207_010 0.2433830445 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_012218_020 0.2769645756 - - hypothetical protein JCGZ_14688 [Jatropha curcas]
8 Hb_004116_010 0.2772819466 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_013253_030 0.2992638354 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
10 Hb_103806_010 0.3001238551 - - PREDICTED: aldose 1-epimerase [Jatropha curcas]
11 Hb_172665_010 0.3018857292 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_000816_220 0.3063261919 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
13 Hb_003377_010 0.3072318198 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
14 Hb_012938_010 0.3191058643 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_001344_030 0.3226556324 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_145157_010 0.3256673972 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
17 Hb_000184_030 0.3303453362 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
18 Hb_000043_100 0.3318503151 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
19 Hb_002811_340 0.3332711471 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
20 Hb_000757_090 0.3399356916 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_005496_100 Hb_005496_100 Hb_003020_290 Hb_003020_290 Hb_005496_100--Hb_003020_290 Hb_158235_010 Hb_158235_010 Hb_005496_100--Hb_158235_010 Hb_001519_020 Hb_001519_020 Hb_005496_100--Hb_001519_020 Hb_008191_010 Hb_008191_010 Hb_005496_100--Hb_008191_010 Hb_161207_010 Hb_161207_010 Hb_005496_100--Hb_161207_010 Hb_012218_020 Hb_012218_020 Hb_005496_100--Hb_012218_020 Hb_003020_290--Hb_158235_010 Hb_003020_290--Hb_001519_020 Hb_001344_030 Hb_001344_030 Hb_003020_290--Hb_001344_030 Hb_000757_090 Hb_000757_090 Hb_003020_290--Hb_000757_090 Hb_186054_010 Hb_186054_010 Hb_003020_290--Hb_186054_010 Hb_158235_010--Hb_001519_020 Hb_158235_010--Hb_001344_030 Hb_013253_030 Hb_013253_030 Hb_158235_010--Hb_013253_030 Hb_000043_100 Hb_000043_100 Hb_158235_010--Hb_000043_100 Hb_007157_010 Hb_007157_010 Hb_001519_020--Hb_007157_010 Hb_001519_020--Hb_000757_090 Hb_001519_020--Hb_001344_030 Hb_002874_140 Hb_002874_140 Hb_008191_010--Hb_002874_140 Hb_008191_010--Hb_161207_010 Hb_000016_120 Hb_000016_120 Hb_008191_010--Hb_000016_120 Hb_112046_010 Hb_112046_010 Hb_008191_010--Hb_112046_010 Hb_012938_010 Hb_012938_010 Hb_008191_010--Hb_012938_010 Hb_000184_030 Hb_000184_030 Hb_161207_010--Hb_000184_030 Hb_009615_180 Hb_009615_180 Hb_161207_010--Hb_009615_180 Hb_145157_010 Hb_145157_010 Hb_161207_010--Hb_145157_010 Hb_003622_020 Hb_003622_020 Hb_161207_010--Hb_003622_020 Hb_000473_060 Hb_000473_060 Hb_161207_010--Hb_000473_060 Hb_002811_340 Hb_002811_340 Hb_012218_020--Hb_002811_340 Hb_033222_010 Hb_033222_010 Hb_012218_020--Hb_033222_010 Hb_012218_020--Hb_012938_010 Hb_000002_420 Hb_000002_420 Hb_012218_020--Hb_000002_420 Hb_012218_020--Hb_000016_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0328655 0 0.0209496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.044717 0.0351729 0 0 0.144893

CAGE analysis