Hb_005496_130

Information

Type -
Description -
Location Contig5496: 102531-113745
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01720g
description POPTRDRAFT_1097893; ubiquitin system component Cue domain-containing family protein
nr
ID XP_012068233.1
description PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9H1I8
description Activating signal cointegrator 1 complex subunit 2 OS=Homo sapiens GN=ASCC2 PE=1 SV=3
trembl
ID A0A067LAV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16037 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin system component cue isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48225: 110813-111155
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_130 0.0 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
2 Hb_008554_130 0.0605009463 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
3 Hb_000165_250 0.0620235685 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
4 Hb_000291_050 0.0669112915 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
5 Hb_009767_110 0.0675886848 - - -
6 Hb_002725_120 0.0719919063 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
7 Hb_000029_050 0.0726842045 - - expressed protein, putative [Ricinus communis]
8 Hb_008785_040 0.0727730454 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
9 Hb_044728_010 0.0728176582 - - -
10 Hb_006649_050 0.0730062572 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
11 Hb_017358_030 0.0789513963 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
12 Hb_001671_010 0.0794860593 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
13 Hb_001369_730 0.0804785352 - - F5O11.10, putative isoform 1 [Theobroma cacao]
14 Hb_004800_080 0.081167088 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
15 Hb_002154_100 0.0812324464 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
16 Hb_006913_030 0.0833041072 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
17 Hb_003226_180 0.0843622869 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
18 Hb_086639_040 0.0850535907 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
19 Hb_002681_070 0.0855489713 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
20 Hb_008221_180 0.0859901339 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005496_130 Hb_005496_130 Hb_008554_130 Hb_008554_130 Hb_005496_130--Hb_008554_130 Hb_000165_250 Hb_000165_250 Hb_005496_130--Hb_000165_250 Hb_000291_050 Hb_000291_050 Hb_005496_130--Hb_000291_050 Hb_009767_110 Hb_009767_110 Hb_005496_130--Hb_009767_110 Hb_002725_120 Hb_002725_120 Hb_005496_130--Hb_002725_120 Hb_000029_050 Hb_000029_050 Hb_005496_130--Hb_000029_050 Hb_004800_080 Hb_004800_080 Hb_008554_130--Hb_004800_080 Hb_008554_130--Hb_009767_110 Hb_044728_010 Hb_044728_010 Hb_008554_130--Hb_044728_010 Hb_001369_730 Hb_001369_730 Hb_008554_130--Hb_001369_730 Hb_167498_010 Hb_167498_010 Hb_008554_130--Hb_167498_010 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_000165_250--Hb_000291_050 Hb_000291_050--Hb_002725_120 Hb_005779_080 Hb_005779_080 Hb_000291_050--Hb_005779_080 Hb_000291_050--Hb_006649_050 Hb_001004_060 Hb_001004_060 Hb_000291_050--Hb_001004_060 Hb_009767_110--Hb_044728_010 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_009767_110--Hb_002725_120 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470 Hb_002725_120--Hb_006649_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_002725_120--Hb_000165_250 Hb_000029_050--Hb_004221_020 Hb_005993_050 Hb_005993_050 Hb_000029_050--Hb_005993_050 Hb_023386_020 Hb_023386_020 Hb_000029_050--Hb_023386_020 Hb_000029_050--Hb_005779_080 Hb_001409_020 Hb_001409_020 Hb_000029_050--Hb_001409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.67916 2.86858 1.5925 1.69026 3.83362 3.52738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30103 4.08977 3.53515 2.23871 4.12673

CAGE analysis