Hb_005496_140

Information

Type -
Description -
Location Contig5496: 114511-119891
Sequence    

Annotation

kegg
ID rcu:RCOM_1587580
description hypothetical protein
nr
ID XP_002510104.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5S1U6
description Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1 PE=2 SV=1
trembl
ID B9R711
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587580 PE=4 SV=1
Gene Ontology
ID GO:0005488
description interferon-related developmental regulator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48227: 114600-120294
cDNA
(Sanger)
(ID:Location)		 025_J16.ab1: 118660-120292

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002863_050 0.0539455742 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_002235_250 0.055299119 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
4 Hb_000375_350 0.0556729357 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
5 Hb_001252_130 0.0558241635 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
6 Hb_017895_040 0.060596415 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
7 Hb_003416_010 0.0608102188 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
8 Hb_002641_060 0.0613505138 - - prefoldin subunit, putative [Ricinus communis]
9 Hb_000373_070 0.0619668551 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
10 Hb_000599_250 0.0621846447 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
11 Hb_000614_160 0.0660240042 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
12 Hb_003582_060 0.0660465358 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
13 Hb_000340_180 0.0662284484 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
14 Hb_004934_100 0.0663751866 - - conserved hypothetical protein [Ricinus communis]
15 Hb_024439_010 0.0681773649 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
16 Hb_001142_030 0.0691427987 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
17 Hb_000215_110 0.0706195227 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
18 Hb_000331_260 0.0708194863 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
19 Hb_001163_050 0.0711908344 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
20 Hb_000081_160 0.0724457319 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]

Gene co-expression network

sample Hb_005496_140 Hb_005496_140 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_000375_350 Hb_000375_350 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_000580_180 Hb_000580_180 Hb_002863_050--Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_002863_050--Hb_005144_160 Hb_001142_030 Hb_001142_030 Hb_002863_050--Hb_001142_030 Hb_002863_050--Hb_003416_010 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_000331_260 Hb_000331_260 Hb_002235_250--Hb_000331_260 Hb_001971_010 Hb_001971_010 Hb_002235_250--Hb_001971_010 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_002235_250--Hb_000866_010 Hb_002235_250--Hb_000375_350 Hb_000375_350--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_000081_160 Hb_000081_160 Hb_001252_130--Hb_000081_160 Hb_001252_130--Hb_001971_010 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_000054_090 Hb_000054_090 Hb_001252_130--Hb_000054_090 Hb_003582_060 Hb_003582_060 Hb_017895_040--Hb_003582_060 Hb_024439_010 Hb_024439_010 Hb_017895_040--Hb_024439_010 Hb_017895_040--Hb_013575_010 Hb_017895_040--Hb_002641_060 Hb_008847_030 Hb_008847_030 Hb_003416_010--Hb_008847_030 Hb_003416_010--Hb_002641_060 Hb_003938_090 Hb_003938_090 Hb_003416_010--Hb_003938_090 Hb_003416_010--Hb_001142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.2868 28.0371 44.2192 49.1635 36.1964 47.5773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4906 73.3218 53.0803 30.5015 42.9099

CAGE analysis