Hb_005496_150

Information

Type -
Description -
Location Contig5496: 131718-133096
Sequence    

Annotation

kegg
ID rcu:RCOM_1587570
description cyclin d, putative
nr
ID XP_012068229.1
description PREDICTED: cyclin-D5-1-like [Jatropha curcas]
swissprot
ID Q2V3B2
description Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2
trembl
ID A0A067L331
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16035 PE=3 SV=1
Gene Ontology
ID GO:0005634
description d5-type cyclin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48228: 131783-132327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_150 0.0 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
2 Hb_001040_110 0.145500035 - - PREDICTED: uncharacterized protein LOC105649527 [Jatropha curcas]
3 Hb_000735_130 0.1628715499 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004228_080 0.1670902848 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
5 Hb_003336_030 0.16827243 - - transcription factor, putative [Ricinus communis]
6 Hb_011671_390 0.1730246884 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
7 Hb_003734_060 0.1730661848 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
8 Hb_028487_030 0.1752315766 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002183_070 0.1763726006 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
10 Hb_006487_070 0.1793834111 - - PREDICTED: rop guanine nucleotide exchange factor 14 [Jatropha curcas]
11 Hb_000935_030 0.1833839959 - - Squalene monooxygenase, putative [Ricinus communis]
12 Hb_001277_070 0.183749782 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
13 Hb_048476_110 0.1840693188 - - PREDICTED: adagio protein 3 [Jatropha curcas]
14 Hb_001218_040 0.1840894246 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
15 Hb_024714_050 0.184215833 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
16 Hb_020805_080 0.1843815321 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
17 Hb_001268_420 0.1844647279 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
18 Hb_000575_030 0.1845704789 - - unnamed protein product [Vitis vinifera]
19 Hb_028872_080 0.1846985879 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
20 Hb_002234_060 0.1851388318 - - F-box protein, atfbl3, putative [Ricinus communis]

Gene co-expression network

sample Hb_005496_150 Hb_005496_150 Hb_001040_110 Hb_001040_110 Hb_005496_150--Hb_001040_110 Hb_000735_130 Hb_000735_130 Hb_005496_150--Hb_000735_130 Hb_004228_080 Hb_004228_080 Hb_005496_150--Hb_004228_080 Hb_003336_030 Hb_003336_030 Hb_005496_150--Hb_003336_030 Hb_011671_390 Hb_011671_390 Hb_005496_150--Hb_011671_390 Hb_003734_060 Hb_003734_060 Hb_005496_150--Hb_003734_060 Hb_004846_090 Hb_004846_090 Hb_001040_110--Hb_004846_090 Hb_001040_110--Hb_011671_390 Hb_012505_010 Hb_012505_010 Hb_001040_110--Hb_012505_010 Hb_000802_100 Hb_000802_100 Hb_001040_110--Hb_000802_100 Hb_001300_040 Hb_001300_040 Hb_001040_110--Hb_001300_040 Hb_000453_090 Hb_000453_090 Hb_001040_110--Hb_000453_090 Hb_000062_340 Hb_000062_340 Hb_000735_130--Hb_000062_340 Hb_000735_130--Hb_012505_010 Hb_001277_070 Hb_001277_070 Hb_000735_130--Hb_001277_070 Hb_044662_070 Hb_044662_070 Hb_000735_130--Hb_044662_070 Hb_003376_120 Hb_003376_120 Hb_000735_130--Hb_003376_120 Hb_004048_110 Hb_004048_110 Hb_000735_130--Hb_004048_110 Hb_007432_030 Hb_007432_030 Hb_004228_080--Hb_007432_030 Hb_020805_080 Hb_020805_080 Hb_004228_080--Hb_020805_080 Hb_002183_070 Hb_002183_070 Hb_004228_080--Hb_002183_070 Hb_004934_030 Hb_004934_030 Hb_004228_080--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_004228_080--Hb_002374_570 Hb_003607_150 Hb_003607_150 Hb_004228_080--Hb_003607_150 Hb_138585_050 Hb_138585_050 Hb_003336_030--Hb_138585_050 Hb_000320_180 Hb_000320_180 Hb_003336_030--Hb_000320_180 Hb_024714_050 Hb_024714_050 Hb_003336_030--Hb_024714_050 Hb_000210_220 Hb_000210_220 Hb_003336_030--Hb_000210_220 Hb_000272_140 Hb_000272_140 Hb_003336_030--Hb_000272_140 Hb_000169_140 Hb_000169_140 Hb_003336_030--Hb_000169_140 Hb_011671_390--Hb_004846_090 Hb_028487_030 Hb_028487_030 Hb_011671_390--Hb_028487_030 Hb_001616_030 Hb_001616_030 Hb_011671_390--Hb_001616_030 Hb_028486_030 Hb_028486_030 Hb_011671_390--Hb_028486_030 Hb_002999_050 Hb_002999_050 Hb_011671_390--Hb_002999_050 Hb_000069_700 Hb_000069_700 Hb_011671_390--Hb_000069_700 Hb_002168_060 Hb_002168_060 Hb_003734_060--Hb_002168_060 Hb_004619_080 Hb_004619_080 Hb_003734_060--Hb_004619_080 Hb_028872_080 Hb_028872_080 Hb_003734_060--Hb_028872_080 Hb_002871_190 Hb_002871_190 Hb_003734_060--Hb_002871_190 Hb_003734_060--Hb_002374_570 Hb_000025_210 Hb_000025_210 Hb_003734_060--Hb_000025_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.425679 0.0674291 0.903458 0.14345 0.302823 0.287143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38551 0.847536 0.890838 0.0974049 0.412522

CAGE analysis