Hb_005496_170

Information

Type -
Description -
Location Contig5496: 156516-158069
Sequence    

Annotation

kegg
ID rcu:RCOM_1587550
description sigma factor sigb regulation protein rsbq, putative (EC:3.1.1.1)
nr
ID XP_002510101.1
description sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
swissprot
ID J9U5U9
description Probable strigolactone esterase DAD2 OS=Petunia hybrida GN=DAD2 PE=1 SV=1
trembl
ID B9R708
description Sigma factor sigb regulation protein rsbq, putative OS=Ricinus communis GN=RCOM_1587550 PE=4 SV=1
Gene Ontology
ID GO:0010223
description probable strigolactone esterase dad2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48233: 156500-157794 , PASA_asmbl_48234: 157853-158134
cDNA
(Sanger)
(ID:Location)		 018_C09.ab1: 156506-157299

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_170 0.0 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
2 Hb_010880_010 0.0724799243 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
3 Hb_003224_010 0.081270419 - - -
4 Hb_127661_010 0.0902023911 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_017098_050 0.0951186045 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
6 Hb_000261_370 0.0998473546 - - -
7 Hb_016637_020 0.1012198173 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
8 Hb_009554_030 0.1016312509 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
9 Hb_007205_020 0.1021103548 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
10 Hb_007113_020 0.1039377571 - - -
11 Hb_001109_130 0.1080271825 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
12 Hb_003849_030 0.1111107985 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
13 Hb_001819_010 0.11939949 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
14 Hb_001153_090 0.1197150254 - - PREDICTED: protein FAM63A [Jatropha curcas]
15 Hb_023344_130 0.1201583382 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
16 Hb_000046_430 0.1211286256 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
17 Hb_170878_050 0.1214781854 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
18 Hb_002849_120 0.1216206285 - - ferric reductase oxidase [Manihot esculenta]
19 Hb_000191_100 0.1223581435 - - cytochrome P450, putative [Ricinus communis]
20 Hb_094148_010 0.123561683 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005496_170 Hb_005496_170 Hb_010880_010 Hb_010880_010 Hb_005496_170--Hb_010880_010 Hb_003224_010 Hb_003224_010 Hb_005496_170--Hb_003224_010 Hb_127661_010 Hb_127661_010 Hb_005496_170--Hb_127661_010 Hb_017098_050 Hb_017098_050 Hb_005496_170--Hb_017098_050 Hb_000261_370 Hb_000261_370 Hb_005496_170--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_005496_170--Hb_016637_020 Hb_001109_130 Hb_001109_130 Hb_010880_010--Hb_001109_130 Hb_004122_060 Hb_004122_060 Hb_010880_010--Hb_004122_060 Hb_026144_030 Hb_026144_030 Hb_010880_010--Hb_026144_030 Hb_010880_010--Hb_017098_050 Hb_001153_090 Hb_001153_090 Hb_010880_010--Hb_001153_090 Hb_000189_160 Hb_000189_160 Hb_003224_010--Hb_000189_160 Hb_000046_430 Hb_000046_430 Hb_003224_010--Hb_000046_430 Hb_094148_010 Hb_094148_010 Hb_003224_010--Hb_094148_010 Hb_009554_030 Hb_009554_030 Hb_003224_010--Hb_009554_030 Hb_002503_050 Hb_002503_050 Hb_003224_010--Hb_002503_050 Hb_127661_010--Hb_000261_370 Hb_127661_010--Hb_016637_020 Hb_029576_100 Hb_029576_100 Hb_127661_010--Hb_029576_100 Hb_000680_020 Hb_000680_020 Hb_127661_010--Hb_000680_020 Hb_000501_040 Hb_000501_040 Hb_127661_010--Hb_000501_040 Hb_017098_050--Hb_001109_130 Hb_007850_110 Hb_007850_110 Hb_017098_050--Hb_007850_110 Hb_000776_020 Hb_000776_020 Hb_017098_050--Hb_000776_020 Hb_004943_010 Hb_004943_010 Hb_017098_050--Hb_004943_010 Hb_007113_020 Hb_007113_020 Hb_000261_370--Hb_007113_020 Hb_000261_370--Hb_029576_100 Hb_001634_080 Hb_001634_080 Hb_000261_370--Hb_001634_080 Hb_000261_370--Hb_016637_020 Hb_000191_100 Hb_000191_100 Hb_016637_020--Hb_000191_100 Hb_003494_180 Hb_003494_180 Hb_016637_020--Hb_003494_180 Hb_007205_020 Hb_007205_020 Hb_016637_020--Hb_007205_020 Hb_170878_050 Hb_170878_050 Hb_016637_020--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_016637_020--Hb_029866_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0457523 31.0689 36.9928 21.5717 0.0678989 0.0371149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0321418 0.0252864 0.0474619 40.3269 46.0804

CAGE analysis