Hb_005501_050

Information

Type -
Description -
Location Contig5501: 88561-91806
Sequence    

Annotation

kegg
ID tcc:TCM_033345
description DNA/RNA polymerases superfamily protein
nr
ID XP_007022574.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FHZ8
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_033345 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005501_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000732_130 0.1496375423 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
3 Hb_011214_020 0.1498065536 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
4 Hb_005736_060 0.1659056994 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
5 Hb_002851_020 0.1664591471 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
6 Hb_002477_140 0.1698691539 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
7 Hb_021596_040 0.1749151461 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000251_130 0.1775420996 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
9 Hb_000753_190 0.1783413457 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
10 Hb_026048_070 0.1785138687 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
11 Hb_000923_050 0.1789581878 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
12 Hb_003581_100 0.1790880359 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
13 Hb_007645_080 0.1799965867 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
14 Hb_004567_120 0.1801279752 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
15 Hb_004129_040 0.1813281859 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
16 Hb_000441_110 0.1824574442 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
17 Hb_004678_050 0.1826496977 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
18 Hb_000483_250 0.1833030439 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
19 Hb_089839_020 0.1837496616 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
20 Hb_001019_040 0.1843514225 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005501_050 Hb_005501_050 Hb_000732_130 Hb_000732_130 Hb_005501_050--Hb_000732_130 Hb_011214_020 Hb_011214_020 Hb_005501_050--Hb_011214_020 Hb_005736_060 Hb_005736_060 Hb_005501_050--Hb_005736_060 Hb_002851_020 Hb_002851_020 Hb_005501_050--Hb_002851_020 Hb_002477_140 Hb_002477_140 Hb_005501_050--Hb_002477_140 Hb_021596_040 Hb_021596_040 Hb_005501_050--Hb_021596_040 Hb_000732_130--Hb_011214_020 Hb_000251_130 Hb_000251_130 Hb_000732_130--Hb_000251_130 Hb_000384_100 Hb_000384_100 Hb_000732_130--Hb_000384_100 Hb_008221_140 Hb_008221_140 Hb_000732_130--Hb_008221_140 Hb_002878_020 Hb_002878_020 Hb_000732_130--Hb_002878_020 Hb_004306_100 Hb_004306_100 Hb_000732_130--Hb_004306_100 Hb_007416_320 Hb_007416_320 Hb_011214_020--Hb_007416_320 Hb_011214_020--Hb_002878_020 Hb_001545_170 Hb_001545_170 Hb_011214_020--Hb_001545_170 Hb_011173_050 Hb_011173_050 Hb_011214_020--Hb_011173_050 Hb_005463_040 Hb_005463_040 Hb_011214_020--Hb_005463_040 Hb_000307_090 Hb_000307_090 Hb_005736_060--Hb_000307_090 Hb_159809_020 Hb_159809_020 Hb_005736_060--Hb_159809_020 Hb_001421_060 Hb_001421_060 Hb_005736_060--Hb_001421_060 Hb_004129_040 Hb_004129_040 Hb_005736_060--Hb_004129_040 Hb_001616_040 Hb_001616_040 Hb_005736_060--Hb_001616_040 Hb_002963_010 Hb_002963_010 Hb_005736_060--Hb_002963_010 Hb_000368_010 Hb_000368_010 Hb_002851_020--Hb_000368_010 Hb_002061_040 Hb_002061_040 Hb_002851_020--Hb_002061_040 Hb_002851_020--Hb_011173_050 Hb_002676_090 Hb_002676_090 Hb_002851_020--Hb_002676_090 Hb_002851_020--Hb_005736_060 Hb_020400_050 Hb_020400_050 Hb_002851_020--Hb_020400_050 Hb_002477_140--Hb_000307_090 Hb_009711_020 Hb_009711_020 Hb_002477_140--Hb_009711_020 Hb_002477_140--Hb_005736_060 Hb_000334_210 Hb_000334_210 Hb_002477_140--Hb_000334_210 Hb_000030_290 Hb_000030_290 Hb_002477_140--Hb_000030_290 Hb_003599_040 Hb_003599_040 Hb_002477_140--Hb_003599_040 Hb_001699_130 Hb_001699_130 Hb_021596_040--Hb_001699_130 Hb_021596_040--Hb_011214_020 Hb_000367_060 Hb_000367_060 Hb_021596_040--Hb_000367_060 Hb_003687_240 Hb_003687_240 Hb_021596_040--Hb_003687_240 Hb_012114_040 Hb_012114_040 Hb_021596_040--Hb_012114_040 Hb_007441_230 Hb_007441_230 Hb_021596_040--Hb_007441_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176595 0.306016 0.0101081 0.0706061 0.197936 0.265265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.526048 0.803372 0.320268 0.359504 0.305683

CAGE analysis