Hb_005503_030

Information

Type -
Description -
Location Contig5503: 21480-26630
Sequence    

Annotation

kegg
ID egr:104421922
description protein SCO1 homolog 1, mitochondrial
nr
ID XP_012087826.1
description PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
swissprot
ID Q8VYP0
description Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1
trembl
ID A0A067JKL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24991 PE=4 SV=1
Gene Ontology
ID GO:0005743
description protein sco1 homolog mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48241: 21377-21814 , PASA_asmbl_48242: 21859-26413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005503_030 0.0 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
2 Hb_143629_010 0.0647026441 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_007576_040 0.0669695294 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
4 Hb_001006_170 0.067560586 - - Endonuclease V, putative [Ricinus communis]
5 Hb_008887_050 0.0712350216 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
6 Hb_031527_100 0.0712621131 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000666_110 0.0724515209 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
8 Hb_000327_120 0.0737615469 - - FGFR1 oncogene partner, putative [Ricinus communis]
9 Hb_031939_010 0.0747316114 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
10 Hb_001439_150 0.0762766198 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
11 Hb_002685_140 0.0772025762 - - PREDICTED: membrin-11 [Jatropha curcas]
12 Hb_007951_060 0.0798311814 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_009838_090 0.0808032296 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
14 Hb_000926_280 0.0821622985 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
15 Hb_000905_190 0.082471604 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
16 Hb_033843_010 0.0827234313 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
17 Hb_003642_060 0.0832630364 - - hypothetical protein RCOM_1189860 [Ricinus communis]
18 Hb_000141_060 0.0857854359 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
19 Hb_002081_130 0.0872023986 - - serine carboxypeptidase, putative [Ricinus communis]
20 Hb_012092_010 0.0872246569 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]

Gene co-expression network

sample Hb_005503_030 Hb_005503_030 Hb_143629_010 Hb_143629_010 Hb_005503_030--Hb_143629_010 Hb_007576_040 Hb_007576_040 Hb_005503_030--Hb_007576_040 Hb_001006_170 Hb_001006_170 Hb_005503_030--Hb_001006_170 Hb_008887_050 Hb_008887_050 Hb_005503_030--Hb_008887_050 Hb_031527_100 Hb_031527_100 Hb_005503_030--Hb_031527_100 Hb_000666_110 Hb_000666_110 Hb_005503_030--Hb_000666_110 Hb_143629_010--Hb_008887_050 Hb_001741_140 Hb_001741_140 Hb_143629_010--Hb_001741_140 Hb_000141_060 Hb_000141_060 Hb_143629_010--Hb_000141_060 Hb_171900_100 Hb_171900_100 Hb_143629_010--Hb_171900_100 Hb_031939_010 Hb_031939_010 Hb_143629_010--Hb_031939_010 Hb_010661_030 Hb_010661_030 Hb_007576_040--Hb_010661_030 Hb_007951_060 Hb_007951_060 Hb_007576_040--Hb_007951_060 Hb_063716_050 Hb_063716_050 Hb_007576_040--Hb_063716_050 Hb_000327_120 Hb_000327_120 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060 Hb_000017_120 Hb_000017_120 Hb_001006_170--Hb_000017_120 Hb_168707_030 Hb_168707_030 Hb_001006_170--Hb_168707_030 Hb_033843_010 Hb_033843_010 Hb_001006_170--Hb_033843_010 Hb_002149_020 Hb_002149_020 Hb_001006_170--Hb_002149_020 Hb_000000_080 Hb_000000_080 Hb_001006_170--Hb_000000_080 Hb_008887_050--Hb_031939_010 Hb_000923_040 Hb_000923_040 Hb_008887_050--Hb_000923_040 Hb_000290_020 Hb_000290_020 Hb_008887_050--Hb_000290_020 Hb_002007_350 Hb_002007_350 Hb_008887_050--Hb_002007_350 Hb_004837_190 Hb_004837_190 Hb_031527_100--Hb_004837_190 Hb_054865_100 Hb_054865_100 Hb_031527_100--Hb_054865_100 Hb_031527_100--Hb_008887_050 Hb_031527_100--Hb_000327_120 Hb_000477_030 Hb_000477_030 Hb_031527_100--Hb_000477_030 Hb_001504_150 Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_019962_030 Hb_019962_030 Hb_000666_110--Hb_019962_030 Hb_000666_110--Hb_000141_060 Hb_000538_020 Hb_000538_020 Hb_000666_110--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8229 8.54059 16.5345 8.7784 34.0802 28.99
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1827 22.285 20.3417 12.8993 5.31079

CAGE analysis