Hb_005503_040

Information

Type -
Description -
Location Contig5503: 31429-40804
Sequence    

Annotation

kegg
ID pmum:103341659
description AMP deaminase
nr
ID XP_012087825.1
description PREDICTED: AMP deaminase [Jatropha curcas]
swissprot
ID O80452
description AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2
trembl
ID A0A067JKA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24990 PE=4 SV=1
Gene Ontology
ID GO:0005634
description amp deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48244: 31378-40813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005503_040 0.0 - - PREDICTED: AMP deaminase [Jatropha curcas]
2 Hb_080313_010 0.0657488978 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
3 Hb_000683_070 0.0659917693 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
4 Hb_004668_060 0.0729962254 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
5 Hb_000617_100 0.0754223478 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
6 Hb_007508_080 0.0778155405 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
7 Hb_100215_010 0.0814291252 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
8 Hb_001195_560 0.0826542319 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
9 Hb_000011_190 0.0833064471 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]
10 Hb_003680_150 0.0842586278 - - srpk, putative [Ricinus communis]
11 Hb_000071_030 0.0860125791 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
12 Hb_000505_020 0.0870567245 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
13 Hb_002078_100 0.0871989507 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
14 Hb_001541_230 0.0873688287 - - unnamed protein product [Vitis vinifera]
15 Hb_001140_350 0.0877118401 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
16 Hb_028308_010 0.0882839934 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
17 Hb_001454_280 0.0884995749 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
18 Hb_000983_150 0.089924071 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
19 Hb_000109_100 0.0916833447 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
20 Hb_002174_020 0.0921230988 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005503_040 Hb_005503_040 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_000683_070 Hb_000683_070 Hb_005503_040--Hb_000683_070 Hb_004668_060 Hb_004668_060 Hb_005503_040--Hb_004668_060 Hb_000617_100 Hb_000617_100 Hb_005503_040--Hb_000617_100 Hb_007508_080 Hb_007508_080 Hb_005503_040--Hb_007508_080 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010 Hb_012023_020 Hb_012023_020 Hb_080313_010--Hb_012023_020 Hb_001140_350 Hb_001140_350 Hb_080313_010--Hb_001140_350 Hb_063716_080 Hb_063716_080 Hb_080313_010--Hb_063716_080 Hb_003747_010 Hb_003747_010 Hb_080313_010--Hb_003747_010 Hb_001454_320 Hb_001454_320 Hb_080313_010--Hb_001454_320 Hb_000683_070--Hb_000617_100 Hb_021409_040 Hb_021409_040 Hb_000683_070--Hb_021409_040 Hb_000366_120 Hb_000366_120 Hb_000683_070--Hb_000366_120 Hb_001369_130 Hb_001369_130 Hb_000683_070--Hb_001369_130 Hb_000982_060 Hb_000982_060 Hb_000683_070--Hb_000982_060 Hb_001377_160 Hb_001377_160 Hb_004668_060--Hb_001377_160 Hb_004668_060--Hb_007508_080 Hb_001033_050 Hb_001033_050 Hb_004668_060--Hb_001033_050 Hb_000139_130 Hb_000139_130 Hb_004668_060--Hb_000139_130 Hb_000046_070 Hb_000046_070 Hb_004668_060--Hb_000046_070 Hb_007576_110 Hb_007576_110 Hb_000617_100--Hb_007576_110 Hb_003549_150 Hb_003549_150 Hb_000617_100--Hb_003549_150 Hb_014361_070 Hb_014361_070 Hb_000617_100--Hb_014361_070 Hb_001195_560 Hb_001195_560 Hb_000617_100--Hb_001195_560 Hb_001051_080 Hb_001051_080 Hb_000617_100--Hb_001051_080 Hb_008103_020 Hb_008103_020 Hb_007508_080--Hb_008103_020 Hb_007508_080--Hb_000139_130 Hb_007508_080--Hb_001377_160 Hb_004109_230 Hb_004109_230 Hb_007508_080--Hb_004109_230 Hb_000983_150 Hb_000983_150 Hb_100215_010--Hb_000983_150 Hb_000300_440 Hb_000300_440 Hb_100215_010--Hb_000300_440 Hb_004689_050 Hb_004689_050 Hb_100215_010--Hb_004689_050 Hb_003362_070 Hb_003362_070 Hb_100215_010--Hb_003362_070 Hb_000023_190 Hb_000023_190 Hb_100215_010--Hb_000023_190 Hb_000343_030 Hb_000343_030 Hb_100215_010--Hb_000343_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2112 17.7517 11.4048 20.8464 23.348 22.7873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8485 8.28837 9.86571 18.426 11.3126

CAGE analysis