Hb_005504_010

Information

Type -
Description -
Location Contig5504: 1766-1915
Sequence    

Annotation

kegg
ID pop:POPTR_1605s00200g
description hypothetical protein
nr
ID XP_006387178.1
description hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DVL1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_1605s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005504_010 0.0 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
2 Hb_101040_010 0.1925612204 - - -
3 Hb_032076_010 0.2349545668 - - -
4 Hb_000071_200 0.2354305058 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
5 Hb_001676_030 0.2426207072 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_012188_010 0.2428477638 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_063433_010 0.2441235978 - - Chloroplast channel forming outer membrane protein isoform 2 [Theobroma cacao]
8 Hb_001217_060 0.2519905468 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_001396_170 0.2739380539 - - unnamed protein product [Vitis vinifera]
10 Hb_062585_010 0.2779749989 - - hypothetical protein JCGZ_19532 [Jatropha curcas]
11 Hb_138652_020 0.2814101494 - - -
12 Hb_114261_010 0.2961404593 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
13 Hb_001396_150 0.3123632823 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
14 Hb_065395_010 0.3179068397 - - hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
15 Hb_000574_150 0.3216949321 - - PREDICTED: protein SRG1-like [Jatropha curcas]
16 Hb_000317_090 0.3260263109 - - hypothetical protein RCOM_1176360 [Ricinus communis]
17 Hb_000217_050 0.3289231382 - - elongation factor 1-alpha, putative [Ricinus communis]
18 Hb_000579_150 0.3345743481 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
19 Hb_003772_080 0.3378838567 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
20 Hb_002837_090 0.3399020936 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]

Gene co-expression network

sample Hb_005504_010 Hb_005504_010 Hb_101040_010 Hb_101040_010 Hb_005504_010--Hb_101040_010 Hb_032076_010 Hb_032076_010 Hb_005504_010--Hb_032076_010 Hb_000071_200 Hb_000071_200 Hb_005504_010--Hb_000071_200 Hb_001676_030 Hb_001676_030 Hb_005504_010--Hb_001676_030 Hb_012188_010 Hb_012188_010 Hb_005504_010--Hb_012188_010 Hb_063433_010 Hb_063433_010 Hb_005504_010--Hb_063433_010 Hb_101040_010--Hb_001676_030 Hb_101040_010--Hb_000071_200 Hb_000317_090 Hb_000317_090 Hb_101040_010--Hb_000317_090 Hb_138652_020 Hb_138652_020 Hb_101040_010--Hb_138652_020 Hb_002837_090 Hb_002837_090 Hb_101040_010--Hb_002837_090 Hb_032076_010--Hb_012188_010 Hb_001217_060 Hb_001217_060 Hb_032076_010--Hb_001217_060 Hb_032076_010--Hb_000071_200 Hb_000579_150 Hb_000579_150 Hb_032076_010--Hb_000579_150 Hb_032076_010--Hb_101040_010 Hb_000071_200--Hb_001217_060 Hb_000071_200--Hb_012188_010 Hb_000071_200--Hb_001676_030 Hb_005539_300 Hb_005539_300 Hb_000071_200--Hb_005539_300 Hb_005671_030 Hb_005671_030 Hb_001676_030--Hb_005671_030 Hb_187661_010 Hb_187661_010 Hb_001676_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_001676_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_001676_030--Hb_056305_010 Hb_012188_010--Hb_001217_060 Hb_012188_010--Hb_000579_150 Hb_012188_010--Hb_101040_010 Hb_000089_150 Hb_000089_150 Hb_063433_010--Hb_000089_150 Hb_001396_170 Hb_001396_170 Hb_063433_010--Hb_001396_170 Hb_063433_010--Hb_101040_010 Hb_063433_010--Hb_032076_010 Hb_000217_060 Hb_000217_060 Hb_063433_010--Hb_000217_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
360.702 149.06 0 0 7.74855 275.69
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 9.19952 37.1969 22.4393

CAGE analysis