Hb_005504_050

Information

Type -
Description -
Location Contig5504: 48669-54712
Sequence    

Annotation

kegg
ID egr:104444148
description probable prolyl 4-hydroxylase 9
nr
ID CAA19873.1
description putative protein [Arabidopsis thaliana]
swissprot
ID F4ILF8
description Prolyl 4-hydroxylase 13 OS=Arabidopsis thaliana GN=P4H13 PE=2 SV=1
trembl
ID A0A067ERQ4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023180mg PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable prolyl 4-hydroxylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48253: 48669-64934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005504_050 0.0 - - putative protein [Arabidopsis thaliana]
2 Hb_000487_270 0.0767716628 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
3 Hb_008279_040 0.0853041127 - - Rer1 family protein isoform 2 [Theobroma cacao]
4 Hb_003529_030 0.0865210469 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
5 Hb_004627_040 0.0872502513 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
6 Hb_185255_010 0.0901011973 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_004607_090 0.0943586821 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
8 Hb_010515_020 0.0963875681 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
9 Hb_000384_070 0.0971242429 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004990_010 0.0982681201 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
11 Hb_000096_140 0.1000176462 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_019181_040 0.1000467213 - - component of oligomeric golgi complex, putative [Ricinus communis]
13 Hb_000256_150 0.1011032112 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
14 Hb_000300_630 0.1011403552 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
15 Hb_004129_140 0.1015771547 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
16 Hb_000208_280 0.1027774608 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
17 Hb_000300_270 0.1030925214 - - cationic amino acid transporter, putative [Ricinus communis]
18 Hb_000220_100 0.1037302699 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
19 Hb_000836_280 0.1041215723 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
20 Hb_003086_170 0.1048331871 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]

Gene co-expression network

sample Hb_005504_050 Hb_005504_050 Hb_000487_270 Hb_000487_270 Hb_005504_050--Hb_000487_270 Hb_008279_040 Hb_008279_040 Hb_005504_050--Hb_008279_040 Hb_003529_030 Hb_003529_030 Hb_005504_050--Hb_003529_030 Hb_004627_040 Hb_004627_040 Hb_005504_050--Hb_004627_040 Hb_185255_010 Hb_185255_010 Hb_005504_050--Hb_185255_010 Hb_004607_090 Hb_004607_090 Hb_005504_050--Hb_004607_090 Hb_000574_450 Hb_000574_450 Hb_000487_270--Hb_000574_450 Hb_004990_010 Hb_004990_010 Hb_000487_270--Hb_004990_010 Hb_010515_020 Hb_010515_020 Hb_000487_270--Hb_010515_020 Hb_000487_270--Hb_008279_040 Hb_000208_280 Hb_000208_280 Hb_000487_270--Hb_000208_280 Hb_001679_050 Hb_001679_050 Hb_000487_270--Hb_001679_050 Hb_001259_050 Hb_001259_050 Hb_008279_040--Hb_001259_050 Hb_003607_130 Hb_003607_130 Hb_008279_040--Hb_003607_130 Hb_008279_040--Hb_010515_020 Hb_008279_040--Hb_001679_050 Hb_002071_070 Hb_002071_070 Hb_008279_040--Hb_002071_070 Hb_000258_240 Hb_000258_240 Hb_003529_030--Hb_000258_240 Hb_000917_130 Hb_000917_130 Hb_003529_030--Hb_000917_130 Hb_000477_100 Hb_000477_100 Hb_003529_030--Hb_000477_100 Hb_000060_050 Hb_000060_050 Hb_003529_030--Hb_000060_050 Hb_004129_140 Hb_004129_140 Hb_003529_030--Hb_004129_140 Hb_006618_120 Hb_006618_120 Hb_004627_040--Hb_006618_120 Hb_013575_010 Hb_013575_010 Hb_004627_040--Hb_013575_010 Hb_030736_020 Hb_030736_020 Hb_004627_040--Hb_030736_020 Hb_000300_630 Hb_000300_630 Hb_004627_040--Hb_000300_630 Hb_004627_040--Hb_004990_010 Hb_008246_060 Hb_008246_060 Hb_004627_040--Hb_008246_060 Hb_025098_010 Hb_025098_010 Hb_185255_010--Hb_025098_010 Hb_006683_070 Hb_006683_070 Hb_185255_010--Hb_006683_070 Hb_005144_050 Hb_005144_050 Hb_185255_010--Hb_005144_050 Hb_001269_190 Hb_001269_190 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_001307_030 Hb_001307_030 Hb_185255_010--Hb_001307_030 Hb_000983_050 Hb_000983_050 Hb_004607_090--Hb_000983_050 Hb_007472_070 Hb_007472_070 Hb_004607_090--Hb_007472_070 Hb_000603_160 Hb_000603_160 Hb_004607_090--Hb_000603_160 Hb_000087_070 Hb_000087_070 Hb_004607_090--Hb_000087_070 Hb_000300_270 Hb_000300_270 Hb_004607_090--Hb_000300_270 Hb_005162_090 Hb_005162_090 Hb_004607_090--Hb_005162_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39537 8.62551 7.11601 20.2063 8.1777 7.23968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93883 11.619 9.57068 7.20531 11.9859

CAGE analysis