Hb_005504_060

Information

Type -
Description -
Location Contig5504: 63182-64705
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09420g
description POPTRDRAFT_1087308; oxidoreductase family protein
nr
ID XP_011030367.1
description PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
swissprot
ID Q8VZJ7
description Probable prolyl 4-hydroxylase 9 OS=Arabidopsis thaliana GN=P4H9 PE=2 SV=1
trembl
ID B9HMX0
description Oxidoreductase family protein OS=Populus trichocarpa GN=POPTR_0009s09420g PE=4 SV=1
Gene Ontology
ID GO:0005788
description probable prolyl 4-hydroxylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48253: 48669-64934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005504_060 0.0 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Populus euphratica]
2 Hb_000621_010 0.0767665757 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
3 Hb_007672_060 0.0854884145 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
4 Hb_054865_150 0.0867438395 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
5 Hb_005054_090 0.0874790529 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
6 Hb_000170_070 0.0882526816 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
7 Hb_002027_290 0.0884520173 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
8 Hb_000181_130 0.0901375468 - - ATP binding protein, putative [Ricinus communis]
9 Hb_002811_180 0.0912383926 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000318_290 0.0938391155 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
11 Hb_000466_140 0.0968707592 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
12 Hb_000205_100 0.0970435802 - - PREDICTED: exportin-4 [Jatropha curcas]
13 Hb_009558_030 0.0979561074 - - myb3r3, putative [Ricinus communis]
14 Hb_002374_370 0.0987420212 - - protein with unknown function [Ricinus communis]
15 Hb_008406_190 0.1003897401 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
16 Hb_000003_590 0.1005039553 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
17 Hb_002716_130 0.1006688419 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
18 Hb_020665_040 0.1011225447 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
19 Hb_007919_100 0.1016670078 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
20 Hb_002110_190 0.1020500068 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]

Gene co-expression network

sample Hb_005504_060 Hb_005504_060 Hb_000621_010 Hb_000621_010 Hb_005504_060--Hb_000621_010 Hb_007672_060 Hb_007672_060 Hb_005504_060--Hb_007672_060 Hb_054865_150 Hb_054865_150 Hb_005504_060--Hb_054865_150 Hb_005054_090 Hb_005054_090 Hb_005504_060--Hb_005054_090 Hb_000170_070 Hb_000170_070 Hb_005504_060--Hb_000170_070 Hb_002027_290 Hb_002027_290 Hb_005504_060--Hb_002027_290 Hb_008847_030 Hb_008847_030 Hb_000621_010--Hb_008847_030 Hb_002811_180 Hb_002811_180 Hb_000621_010--Hb_002811_180 Hb_000181_130 Hb_000181_130 Hb_000621_010--Hb_000181_130 Hb_003938_090 Hb_003938_090 Hb_000621_010--Hb_003938_090 Hb_000621_010--Hb_005054_090 Hb_002947_030 Hb_002947_030 Hb_007672_060--Hb_002947_030 Hb_000054_090 Hb_000054_090 Hb_007672_060--Hb_000054_090 Hb_001579_270 Hb_001579_270 Hb_007672_060--Hb_001579_270 Hb_000599_300 Hb_000599_300 Hb_007672_060--Hb_000599_300 Hb_033594_120 Hb_033594_120 Hb_007672_060--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_007672_060--Hb_003428_030 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_000156_010 Hb_000156_010 Hb_054865_150--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_000254_090 Hb_000254_090 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_000792_010 Hb_000792_010 Hb_005054_090--Hb_000792_010 Hb_007645_100 Hb_007645_100 Hb_005054_090--Hb_007645_100 Hb_003029_110 Hb_003029_110 Hb_005054_090--Hb_003029_110 Hb_000029_300 Hb_000029_300 Hb_005054_090--Hb_000029_300 Hb_000032_520 Hb_000032_520 Hb_005054_090--Hb_000032_520 Hb_000441_200 Hb_000441_200 Hb_000170_070--Hb_000441_200 Hb_012035_050 Hb_012035_050 Hb_000170_070--Hb_012035_050 Hb_000003_590 Hb_000003_590 Hb_000170_070--Hb_000003_590 Hb_000025_640 Hb_000025_640 Hb_000170_070--Hb_000025_640 Hb_008453_030 Hb_008453_030 Hb_000170_070--Hb_008453_030 Hb_000608_320 Hb_000608_320 Hb_002027_290--Hb_000608_320 Hb_002027_290--Hb_000318_290 Hb_002740_180 Hb_002740_180 Hb_002027_290--Hb_002740_180 Hb_000127_040 Hb_000127_040 Hb_002027_290--Hb_000127_040 Hb_000343_120 Hb_000343_120 Hb_002027_290--Hb_000343_120 Hb_001199_100 Hb_001199_100 Hb_002027_290--Hb_001199_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0323 22.9183 13.5616 39.8064 43.3571 46.0381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.3591 39.2428 24.9297 29.6144 34.9506

CAGE analysis