Hb_005505_050

Information

Type -
Description -
Location Contig5505: 53898-58778
Sequence    

Annotation

kegg
ID vvi:100254401
description uncharacterized LOC100254401
nr
ID XP_012078710.1
description PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
swissprot
ID Q9M7K4
description Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1
trembl
ID A0A067K8C5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13277 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48258: 54292-58498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005505_050 0.0 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
2 Hb_000477_030 0.0551838045 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
3 Hb_000034_100 0.0742516697 - - dnajc14 protein, putative [Ricinus communis]
4 Hb_054865_100 0.075254801 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
5 Hb_002686_250 0.0831590827 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
6 Hb_001541_260 0.0838997481 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
7 Hb_000327_120 0.0848149686 - - FGFR1 oncogene partner, putative [Ricinus communis]
8 Hb_031527_100 0.0863135497 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004724_320 0.0864014326 - - Vesicle-associated membrane protein, putative [Ricinus communis]
10 Hb_000487_110 0.0892104609 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
11 Hb_000613_090 0.0896279364 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
12 Hb_001595_030 0.0905595155 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
13 Hb_001623_420 0.0906376333 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_003029_030 0.0909384733 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
15 Hb_004055_150 0.0916434468 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001083_050 0.0930797365 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
17 Hb_003464_050 0.0933630842 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
18 Hb_000261_220 0.0934444243 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
19 Hb_006185_050 0.0935645664 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
20 Hb_001926_030 0.0940878856 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]

Gene co-expression network

sample Hb_005505_050 Hb_005505_050 Hb_000477_030 Hb_000477_030 Hb_005505_050--Hb_000477_030 Hb_000034_100 Hb_000034_100 Hb_005505_050--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005505_050--Hb_054865_100 Hb_002686_250 Hb_002686_250 Hb_005505_050--Hb_002686_250 Hb_001541_260 Hb_001541_260 Hb_005505_050--Hb_001541_260 Hb_000327_120 Hb_000327_120 Hb_005505_050--Hb_000327_120 Hb_106552_050 Hb_106552_050 Hb_000477_030--Hb_106552_050 Hb_001083_050 Hb_001083_050 Hb_000477_030--Hb_001083_050 Hb_002784_050 Hb_002784_050 Hb_000477_030--Hb_002784_050 Hb_000477_030--Hb_001541_260 Hb_009252_100 Hb_009252_100 Hb_000477_030--Hb_009252_100 Hb_005276_210 Hb_005276_210 Hb_000034_100--Hb_005276_210 Hb_000487_110 Hb_000487_110 Hb_000034_100--Hb_000487_110 Hb_005694_110 Hb_005694_110 Hb_000034_100--Hb_005694_110 Hb_000096_070 Hb_000096_070 Hb_000034_100--Hb_000096_070 Hb_000034_100--Hb_054865_100 Hb_005245_130 Hb_005245_130 Hb_000034_100--Hb_005245_130 Hb_066182_010 Hb_066182_010 Hb_054865_100--Hb_066182_010 Hb_054865_100--Hb_005276_210 Hb_006620_020 Hb_006620_020 Hb_054865_100--Hb_006620_020 Hb_054865_100--Hb_000327_120 Hb_000174_110 Hb_000174_110 Hb_054865_100--Hb_000174_110 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050 Hb_131646_010 Hb_131646_010 Hb_002686_250--Hb_131646_010 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_003029_030 Hb_003029_030 Hb_002686_250--Hb_003029_030 Hb_004785_100 Hb_004785_100 Hb_002686_250--Hb_004785_100 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_002078_110 Hb_002078_110 Hb_002686_250--Hb_002078_110 Hb_144787_030 Hb_144787_030 Hb_001541_260--Hb_144787_030 Hb_000236_100 Hb_000236_100 Hb_001541_260--Hb_000236_100 Hb_000139_250 Hb_000139_250 Hb_001541_260--Hb_000139_250 Hb_000465_470 Hb_000465_470 Hb_001541_260--Hb_000465_470 Hb_000032_490 Hb_000032_490 Hb_001541_260--Hb_000032_490 Hb_000946_120 Hb_000946_120 Hb_001541_260--Hb_000946_120 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.451 15.0713 11.1865 7.30433 25.774 13.7686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8016 13.7346 15.8607 8.6739 5.41352

CAGE analysis