Hb_005510_010

Information

Type -
Description -
Location Contig5510: 7703-14941
Sequence    

Annotation

kegg
ID tcc:TCM_037920
description NSP-interacting GTPase, putative isoform 1
nr
ID XP_012078653.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
swissprot
ID Q8RXE7
description Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2
trembl
ID A0A067K7V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13231 PE=4 SV=1
Gene Ontology
ID GO:0005737
description probable adp-ribosylation factor gtpase-activating protein agd14 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48267: 7771-14907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005510_010 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
2 Hb_057451_010 0.1259663352 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
3 Hb_018133_030 0.1287917556 - - Heme-binding protein, putative [Ricinus communis]
4 Hb_009028_030 0.1431512237 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
5 Hb_001522_010 0.1462330877 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
6 Hb_003157_010 0.1512770919 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
7 Hb_000720_070 0.1534497726 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
8 Hb_010584_010 0.1546612917 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
9 Hb_015763_020 0.1547846651 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
10 Hb_003349_010 0.1549202095 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
11 Hb_001396_260 0.1625862085 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
12 Hb_000265_250 0.1638276897 - - auxilin, putative [Ricinus communis]
13 Hb_000181_360 0.1643635908 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
14 Hb_031527_070 0.1653456547 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
15 Hb_003710_040 0.1665661848 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_005052_010 0.1676453691 - - PREDICTED: uncharacterized protein LOC103339315 [Prunus mume]
17 Hb_007101_180 0.1680597436 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
18 Hb_003096_040 0.1683646659 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
19 Hb_011798_040 0.1691988923 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
20 Hb_004899_070 0.1705852749 - - PREDICTED: RRP12-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_005510_010 Hb_005510_010 Hb_057451_010 Hb_057451_010 Hb_005510_010--Hb_057451_010 Hb_018133_030 Hb_018133_030 Hb_005510_010--Hb_018133_030 Hb_009028_030 Hb_009028_030 Hb_005510_010--Hb_009028_030 Hb_001522_010 Hb_001522_010 Hb_005510_010--Hb_001522_010 Hb_003157_010 Hb_003157_010 Hb_005510_010--Hb_003157_010 Hb_000720_070 Hb_000720_070 Hb_005510_010--Hb_000720_070 Hb_057451_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_057451_010--Hb_000640_200 Hb_057451_010--Hb_003157_010 Hb_003710_040 Hb_003710_040 Hb_057451_010--Hb_003710_040 Hb_004899_070 Hb_004899_070 Hb_057451_010--Hb_004899_070 Hb_000313_340 Hb_000313_340 Hb_057451_010--Hb_000313_340 Hb_018133_030--Hb_009028_030 Hb_018133_030--Hb_057451_010 Hb_000808_070 Hb_000808_070 Hb_018133_030--Hb_000808_070 Hb_004449_050 Hb_004449_050 Hb_018133_030--Hb_004449_050 Hb_030827_060 Hb_030827_060 Hb_018133_030--Hb_030827_060 Hb_164010_070 Hb_164010_070 Hb_018133_030--Hb_164010_070 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_009028_030--Hb_003157_010 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_002188_090 Hb_002188_090 Hb_001522_010--Hb_002188_090 Hb_006829_090 Hb_006829_090 Hb_001522_010--Hb_006829_090 Hb_078477_040 Hb_078477_040 Hb_001522_010--Hb_078477_040 Hb_005462_020 Hb_005462_020 Hb_001522_010--Hb_005462_020 Hb_001009_290 Hb_001009_290 Hb_001522_010--Hb_001009_290 Hb_001522_010--Hb_000313_340 Hb_006501_020 Hb_006501_020 Hb_003157_010--Hb_006501_020 Hb_003157_010--Hb_000808_070 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_002965_030 Hb_002965_030 Hb_000720_070--Hb_002965_030 Hb_001534_070 Hb_001534_070 Hb_000720_070--Hb_001534_070 Hb_013394_060 Hb_013394_060 Hb_000720_070--Hb_013394_060 Hb_005725_020 Hb_005725_020 Hb_000720_070--Hb_005725_020 Hb_027420_050 Hb_027420_050 Hb_000720_070--Hb_027420_050 Hb_002999_060 Hb_002999_060 Hb_000720_070--Hb_002999_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.6906 62.7941 12.9242 11.3283 88.2518 38.329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1919 3.05976 10.8498 31.8202 6.5841

CAGE analysis